RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 ZFHX2Q9C0A1 2572 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-203ENST00000422245 H7C4K7 107 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 CLDN3O15551 220 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 IGFBP6P24592 240 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 UBA7P41226 1012 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 NBL1P41271 181 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 NCKAP1LP55160 1127 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 NTHL1P78549 312 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 ROR1Q01973 937 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 KYAT1Q16773 422 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 PABPC1LQ4VXU2 614 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 VARS2Q5ST30 1063 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 RSPO2Q6UXX9 243 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 FGF13Q92913 245 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 BICD1Q96G01 975 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 CALML4Q96GE6 196 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 TBC1D32Q96NH3 1257 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 TBC1D17Q9HA65 648 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 PLEKHA5Q9HAU0 1116 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 CA14Q9ULX7 337 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 DOCK6Q96HP0 2047 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 MYH15Q9Y2K3 1946 aa12.62□□□□□ -0.39
SQSTM1-203ENST00000422245 KRBA1A5PL33 1030 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 MEFVO15553 781 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 CLTAP09496 248 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 MCM4P33991 863 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 CACNB1Q02641 598 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 LARP1BQ659C4 914 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 ZNF280DQ6N043 979 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 PHLDB3Q6NSJ2 640 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 GPBP1Q86WP2 473 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 DTWD2Q8NBA8 298 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 APPL2Q8NEU8 664 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 RASSF8Q8NHQ8 419 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 ZNF461Q8TAF7 563 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 GPR152Q8TDT2 470 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 C18orf25Q96B23 403 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 ZBTB45Q96K62 511 aaPredicted RBP12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 SUSD3Q96L08 255 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 REEP2Q9BRK0 252 aa12.61□□□□□ -0.39
SQSTM1-203ENST00000422245 NPHP3-ACAD11A0A0J9YXS1 232 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 ARHGEF37A1IGU5 675 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 WDR27A2RRH5 827 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 K7ENM7 598 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 STK25O00506 426 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 PRRG1O14668 218 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 HNRNPDLO14979 420 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 PI15O43692 258 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 TBC1D4O60343 1298 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 ABLIM3O94929 683 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 FAM13AO94988 1023 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 LRG1P02750 347 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 CXCL8P10145 99 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 ELF1P32519 619 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 ABCD1P33897 745 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 LONP1P36776 959 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 MATR3P43243 847 aaKnown RBP eCLIP12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 LIG4P49917 911 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 ZNF131P52739 623 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 PPP2R3AQ06190 1150 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 SLC10A6Q3KNW5 377 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 ARSHQ5FYA8 562 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 TPGS2Q68CL5 300 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 PARM1Q6UWI2 310 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 HAUS6Q7Z4H7 955 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 NPAS3Q8IXF0 933 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 TCEAL8Q8IYN2 117 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 ITFG1Q8TB96 612 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 FGF14Q92915 247 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 PARVGQ9HBI0 331 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 AVENQ9NQS1 362 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 HCFC1R1Q9NWW0 138 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 GDE1Q9NZC3 331 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 DNMT3BQ9UBC3 853 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 TUBGCP4Q9UGJ1 667 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 FBXL5Q9UKA1 691 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 MAFFQ9ULX9 164 aa12.6□□□□□ -0.39
SQSTM1-203ENST00000422245 RIF1Q5UIP0 2472 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 TTC26A0AVF1 554 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 XPOTO43592 962 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 TBCAO75347 108 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 PIGRP01833 764 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 KRT18P05783 430 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 RHOP08100 348 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 ATF2P15336 505 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 PLCG1P19174 1290 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 CYP3A5P20815 502 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 PDCP20941 246 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 LRPAP1P30533 357 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 PFKPQ01813 784 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 MRPL58Q14197 206 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 ANGPT1Q15389 498 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 CTXN3Q4LDR2 81 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 SEZ6Q53EL9 994 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 RAD54LQ92698 747 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 SHDQ96IW2 340 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 TSPAN18Q96SJ8 248 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 BLOC1S4Q9NUP1 217 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 TBX20Q9UMR3 447 aa12.59□□□□□ -0.39
SQSTM1-203ENST00000422245 UBQLN1Q9UMX0 589 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms