RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 PLCG1P19174 1290 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 RFX1P22670 979 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 TXLNAP40222 546 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 APPL2Q8NEU8 664 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 LARP4BQ92615 738 aaKnown RBP23.27■■□□□ 1.32
PTPN4-202ENST00000420482 RAD54LQ92698 747 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 ZHX3Q9H4I2 956 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 FAM86C1Q9NVL1 165 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 WNT16Q9UBV4 365 aa23.27■■□□□ 1.32
PTPN4-202ENST00000420482 CITO14578 2027 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 ZFHX2Q9C0A1 2572 aaPredicted RBP23.26■■□□□ 1.31
PTPN4-202ENST00000420482 I3L4J1 428 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 CCL16O15467 120 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 ADAM12O43184 909 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 GALR2O43603 387 aaPredicted RBP23.26■■□□□ 1.31
PTPN4-202ENST00000420482 TRAK2O60296 914 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 MCM4P33991 863 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 PPP2R3AQ06190 1150 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 KARSQ15046 597 aaKnown RBP23.26■■□□□ 1.31
PTPN4-202ENST00000420482 SLC10A6Q3KNW5 377 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 VARS2Q5ST30 1063 aaKnown RBP23.26■■□□□ 1.31
PTPN4-202ENST00000420482 SLC44A3Q8N4M1 653 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 KRI1Q8N9T8 703 aaKnown RBP23.26■■□□□ 1.31
PTPN4-202ENST00000420482 FLCNQ8NFG4 579 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 ZNF461Q8TAF7 563 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 TSPAN18Q96SJ8 248 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 CCSER1Q9C0I3 900 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 TBX20Q9UMR3 447 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 TRIP11Q15643 1979 aa23.26■■□□□ 1.31
PTPN4-202ENST00000420482 SRFP11831 508 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 MARCKSP29966 332 aaPredicted RBP23.25■■□□□ 1.31
PTPN4-202ENST00000420482 DDIT3P35638 169 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 ZNF131P52739 623 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 MCM6Q14566 821 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 SLC8B1Q6J4K2 584 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 CD300LGQ6UXG3 332 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 MTSS1LQ765P7 747 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 SIX5Q8N196 739 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 C18orf25Q96B23 403 aaPredicted RBP23.25■■□□□ 1.31
PTPN4-202ENST00000420482 RTP3Q9BQQ7 232 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 CDH7Q9ULB5 785 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 VWA8A3KMH1 1905 aa23.25■■□□□ 1.31
PTPN4-202ENST00000420482 STK25O00506 426 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 PRRG1O14668 218 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 LRG1P02750 347 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 CXCL8P10145 99 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 SEZ6Q53EL9 994 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 ZNF280DQ6N043 979 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 RSAD2Q8WXG1 361 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 ATOH1Q92858 354 aaPredicted RBP23.24■■□□□ 1.31
PTPN4-202ENST00000420482 KIF12Q96FN5 646 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 INTS4Q96HW7 963 aaKnown RBP23.24■■□□□ 1.31
PTPN4-202ENST00000420482 SUSD3Q96L08 255 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 BLOC1S4Q9NUP1 217 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 STK17AQ9UEE5 414 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 KCNH3Q9ULD8 1083 aa23.24■■□□□ 1.31
PTPN4-202ENST00000420482 UBQLN1Q9UMX0 589 aaKnown RBP23.24■■□□□ 1.31
PTPN4-202ENST00000420482 OGTO15294 1046 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 PIGRP01833 764 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 CFHP08603 1231 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 CYP3A5P20815 502 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 ROR1Q01973 937 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 CTXN3Q4LDR2 81 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 PABPC1LQ4VXU2 614 aaKnown RBP23.23■■□□□ 1.31
PTPN4-202ENST00000420482 TPGS2Q68CL5 300 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 CD302Q8IX05 232 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 TMEM105Q8N8V8 129 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 MSTO1Q9BUK6 570 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 OXCT2Q9BYC2 517 aaPredicted RBP23.23■■□□□ 1.31
PTPN4-202ENST00000420482 RPF1Q9H9Y2 349 aaKnown RBP23.23■■□□□ 1.31
PTPN4-202ENST00000420482 MAFFQ9ULX9 164 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 DOCK8Q8NF50 2099 aa23.23■■□□□ 1.31
PTPN4-202ENST00000420482 TTC26A0AVF1 554 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 ANHXE9PGG2 379 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 GFRA3O60609 400 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 ATF2P15336 505 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 AOC1P19801 751 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 SYT1P21579 422 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 IGFBP6P24592 240 aaPredicted RBP23.22■■□□□ 1.31
PTPN4-202ENST00000420482 ARPP19P56211 112 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 HTR4Q13639 388 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 RSPO2Q6UXX9 243 aaPredicted RBP23.22■■□□□ 1.31
PTPN4-202ENST00000420482 SRPRBQ9Y5M8 271 aaKnown RBP23.22■■□□□ 1.31
PTPN4-202ENST00000420482 CLIC4Q9Y696 253 aa23.22■■□□□ 1.31
PTPN4-202ENST00000420482 H0Y858 1186 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 NARSO43776 548 aaKnown RBP23.21■■□□□ 1.31
PTPN4-202ENST00000420482 ABLIM3O94929 683 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 PAX3P23760 479 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 GRIN1Q05586 938 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 SLFN12LQ6IEE8 588 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 ELMOD1Q8N336 334 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 FGF13Q92913 245 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 ZSCAN16Q9H4T2 348 aaPredicted RBP23.21■■□□□ 1.31
PTPN4-202ENST00000420482 TUBGCP4Q9UGJ1 667 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 PCDHB8Q9UN66 801 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 MRPS23Q9Y3D9 190 aaKnown RBP23.21■■□□□ 1.31
PTPN4-202ENST00000420482 NUMBLQ9Y6R0 609 aa23.21■■□□□ 1.31
PTPN4-202ENST00000420482 CFAP54Q96N23 3096 aa23.2■■□□□ 1.3
PTPN4-202ENST00000420482 ARHGEF37A1IGU5 675 aa23.2■■□□□ 1.3
PTPN4-202ENST00000420482 PTPN2P17706 415 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms