RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 REV3LO60673 3130 aa13.54□□□□□ -0.24
SKA1-203ENST00000417656 MYO7AQ13402 2215 aa13.54□□□□□ -0.24
SKA1-203ENST00000417656 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.53□□□□□ -0.24
SKA1-203ENST00000417656 HIDE1A8MVS5 230 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 TMEM189-UBE2V1I3L0A0 370 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 I3L4J1 428 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 PDXKO00764 312 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 XPOTO43592 962 aaKnown RBP13.53□□□□□ -0.24
SKA1-203ENST00000417656 EXOC3O60645 756 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 TADA2AO75478 443 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 B3GAT3O94766 335 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 SLC34A2O95436 690 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 NR3C1P04150 777 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 SOD2P04179 222 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 URODP06132 367 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 CTSAP10619 480 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 PRCPP42785 496 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 SMC1AQ14683 1233 aaKnown RBP13.53□□□□□ -0.24
SKA1-203ENST00000417656 SKIV2LQ15477 1246 aaKnown RBP13.53□□□□□ -0.24
SKA1-203ENST00000417656 SNRNP35Q16560 246 aaKnown RBP13.53□□□□□ -0.24
SKA1-203ENST00000417656 ZCWPW2Q504Y3 356 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 CD300LGQ6UXG3 332 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 TAS1R1Q7RTX1 841 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 RDH13Q8NBN7 331 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 BEST2Q8NFU1 509 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 GPT2Q8TD30 523 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 DDX27Q96GQ7 796 aaKnown RBP13.53□□□□□ -0.24
SKA1-203ENST00000417656 NUP62CLQ9H1M0 184 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 KIAA1586Q9HCI6 787 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 PDE11AQ9HCR9 933 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 DERAQ9Y315 318 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 C2CD2Q9Y426 696 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 PTPRJQ12913 1337 aa13.53□□□□□ -0.24
SKA1-203ENST00000417656 ZNF233A6NK53 670 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 C2CD2LO14523 706 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 PPEF2O14830 753 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 CALUO43852 315 aaPredicted RBP13.52□□□□□ -0.25
SKA1-203ENST00000417656 CYP3A5P20815 502 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 BMP6P22004 513 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 LRPAP1P30533 357 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 RPL9P32969 192 aaKnown RBP13.52□□□□□ -0.25
SKA1-203ENST00000417656 GTF2F1P35269 517 aaKnown RBP eCLIP13.52□□□□□ -0.25
SKA1-203ENST00000417656 BRCC3P46736 316 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 GLUD2P49448 558 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 TFAMQ00059 246 aaKnown RBP13.52□□□□□ -0.25
SKA1-203ENST00000417656 CYP24A1Q07973 514 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 HYAL1Q12794 435 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 MORC3Q14149 939 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 PTPN14Q15678 1187 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 COBLL1Q53SF7 1204 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 SPATA1Q5VX52 437 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 LMBRD2Q68DH5 695 aaPredicted RBP13.52□□□□□ -0.25
SKA1-203ENST00000417656 PDE12Q6L8Q7 609 aaKnown RBP13.52□□□□□ -0.25
SKA1-203ENST00000417656 DCLRE1AQ6PJP8 1040 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 TSPAN18Q96SJ8 248 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 NGRNQ9NPE2 291 aaKnown RBP13.52□□□□□ -0.25
SKA1-203ENST00000417656 PRDM6Q9NQX0 595 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 TRAF3IP3Q9Y228 551 aa13.52□□□□□ -0.25
SKA1-203ENST00000417656 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.52□□□□□ -0.25
SKA1-203ENST00000417656 PLXNA3P51805 1871 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 C2orf71A6NGG8 1288 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 PER2O15055 1255 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 CXCL14O95715 111 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 NR2F2P24468 414 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 MCM4P33991 863 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 NRIP1P48552 1158 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 CASP4P49662 377 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 RTP2Q5QGT7 225 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 FAM171A1Q5VUB5 890 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 CEP135Q66GS9 1140 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 RBM23Q86U06 439 aaKnown RBP13.51□□□□□ -0.25
SKA1-203ENST00000417656 SLC9A9Q8IVB4 645 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 ADSSL1Q8N142 457 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 PPP2R3CQ969Q6 453 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 CCDC127Q96BQ5 260 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 GTPBP4Q9BZE4 634 aaKnown RBP13.51□□□□□ -0.25
SKA1-203ENST00000417656 MTMR12Q9C0I1 747 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 IGFLR1Q9H665 355 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 TLE6Q9H808 572 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 DMAC2Q9NW81 257 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 DPP3Q9NY33 737 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 KIAA1468Q9P260 1216 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 STK39Q9UEW8 545 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 NUB1Q9Y5A7 615 aa13.51□□□□□ -0.25
SKA1-203ENST00000417656 COL6A3P12111 3177 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 TRIM49BA6NDI0 452 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 LINC01565O15544 149 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 TMEM191BP0C7N4 346 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 DLATP10515 647 aaKnown RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 TKTP29401 623 aaKnown RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 PMS1P54277 932 aaKnown RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 DSG1Q02413 1049 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 ELAVL2Q12926 359 aaKnown RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 BMS1Q14692 1282 aaKnown RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 PSMD6Q15008 389 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 NFIL3Q16649 462 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 DUSP6Q16828 381 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 USP41Q3LFD5 358 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 C9orf57Q5W0N0 161 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 KLHL10Q6JEL2 608 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms