RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 F5H423 210 aaPredicted RBP14.27□□□□□ -0.12
VPS54-203ENST00000409558 GLRA2P23416 452 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 GTF2H1P32780 548 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 NRLP54845 237 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 NCKAP1LP55160 1127 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 NOP14P78316 857 aaKnown RBP14.27□□□□□ -0.12
VPS54-203ENST00000409558 STXBP2Q15833 593 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 ACAD10Q6JQN1 1059 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 RBBP8NLQ8NC74 664 aaPredicted RBP14.27□□□□□ -0.12
VPS54-203ENST00000409558 SYT11Q9BT88 431 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 STRA6Q9BX79 667 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 TJP2Q9UDY2 1190 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 INTUQ9ULD6 942 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 NCANO14594 1321 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 RASGRF2O14827 1237 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 GRAP2O75791 330 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 IRX3P78415 501 aaPredicted RBP14.27□□□□□ -0.12
VPS54-203ENST00000409558 ADCY2Q08462 1091 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 TRPC3Q13507 836 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 MTMR3Q13615 1198 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 DUPD1Q68J44 220 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 CCDC121Q6ZUS5 278 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 USP37Q86T82 979 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 EMC1Q8N766 993 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 MCEEQ96PE7 176 aa14.27□□□□□ -0.12
VPS54-203ENST00000409558 GMNCA6NCL1 334 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 BTNL10A8MVZ5 291 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 ATP4AP20648 1035 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 HOXA7P31268 230 aaPredicted RBP14.27□□□□□ -0.13
VPS54-203ENST00000409558 CLCN3P51790 818 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 MYL6P60660 151 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 SPRED3Q2MJR0 410 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 ZDHHC24Q6UX98 284 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 ARFGAP2Q8N6H7 521 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 AS3MTQ9HBK9 375 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 INTS9Q9NV88 658 aaKnown RBP14.27□□□□□ -0.13
VPS54-203ENST00000409558 ZNF831Q5JPB2 1677 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 PASKQ96RG2 1323 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 LRRD1A4D1F6 860 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 H0YGN5 161 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 B4GALT5O43286 388 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 TCF7P36402 384 aaPredicted RBP14.27□□□□□ -0.13
VPS54-203ENST00000409558 MAGEA9P43362 315 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 ITGA8P53708 1063 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 MSL3Q8N5Y2 521 aaKnown RBP14.27□□□□□ -0.13
VPS54-203ENST00000409558 NFS1Q9Y697 457 aa14.27□□□□□ -0.13
VPS54-203ENST00000409558 RPTORQ8N122 1335 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 SLC26A4O43511 780 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 TMEM62Q0P6H9 643 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 NCOA4Q13772 614 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 TXNRD3NBQ6F5E7 133 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 SRRM1Q8IYB3 904 aaKnown RBP14.26□□□□□ -0.13
VPS54-203ENST00000409558 KAT2BQ92831 832 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 SPDYE16A6NNV3 312 aaPredicted RBP14.26□□□□□ -0.13
VPS54-203ENST00000409558 SPAG7O75391 227 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 CDO1Q16878 200 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 FAM47EQ6ZV65 393 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 FBXO16Q8IX29 292 aaPredicted RBP14.26□□□□□ -0.13
VPS54-203ENST00000409558 MCOLN2Q8IZK6 566 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 GLIS1Q8NBF1 620 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 MCPH1Q8NEM0 835 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 ANKEF1Q9NU02 776 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 GTF3C4Q9UKN8 822 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 NENFQ9UMX5 172 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 F8VP50 259 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 ZBTB48P10074 688 aaPredicted RBP14.26□□□□□ -0.13
VPS54-203ENST00000409558 PEX5P50542 639 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 STAT5BP51692 787 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 HSDL1Q3SXM5 330 aa14.26□□□□□ -0.13
VPS54-203ENST00000409558 CDC42EP4Q9H3Q1 356 aaKnown RBP14.26□□□□□ -0.13
VPS54-203ENST00000409558 UBE4BO95155 1302 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 MIF4GDA9UHW6 222 aaKnown RBP14.25□□□□□ -0.13
VPS54-203ENST00000409558 SHOX2O60902 331 aaPredicted RBP14.25□□□□□ -0.13
VPS54-203ENST00000409558 CHRNA3P32297 505 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 PPM1EQ8WY54 764 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 GRHL1Q9NZI5 618 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 RGS17Q9UGC6 210 aaPredicted RBP14.25□□□□□ -0.13
VPS54-203ENST00000409558 PGAP2Q9UHJ9 254 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 ANAPC5Q9UJX4 755 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 LTBP1Q14766 1721 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 ATF2P15336 505 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 TNFRSF8P28908 595 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 CLEC16AQ2KHT3 1053 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 XKR3Q5GH77 459 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 ANKS1BQ7Z6G8 1248 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 AFG3L2Q9Y4W6 797 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 KRT1P04264 644 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 SUPT20HL2P0C7V6 817 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 POU5F1Q01860 360 aaKnown RBP14.25□□□□□ -0.13
VPS54-203ENST00000409558 SUPT20HL1Q3ZLR7 823 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 ANKMY2Q8IV38 441 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 IPO4Q8TEX9 1081 aaKnown RBP14.25□□□□□ -0.13
VPS54-203ENST00000409558 WNT8AQ9H1J5 351 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 PABPC3Q9H361 631 aaKnown RBP14.25□□□□□ -0.13
VPS54-203ENST00000409558 BTBD7Q9P203 1132 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 POLIQ9UNA4 740 aa14.25□□□□□ -0.13
VPS54-203ENST00000409558 OATP04181 439 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 UBA1P22314 1058 aaKnown RBP14.24□□□□□ -0.13
VPS54-203ENST00000409558 ALCAMQ13740 583 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 TMEM192Q8IY95 271 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms