RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 USP21Q9UK80 565 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 GTF3C4Q9UKN8 822 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 GOLGA8RI6L899 631 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 POLRMTO00411 1230 aaKnown RBP22.32■■□□□ 1.16
CTCF-202ENST00000401394 SESN3P58005 492 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 CETN1Q12798 172 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 EFTUD2Q15029 972 aaKnown RBP eCLIP22.32■■□□□ 1.166e-7■■■■■ 47.1
CTCF-202ENST00000401394 GSTA5Q7RTV2 222 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 PRMT6Q96LA8 375 aaPredicted RBP22.32■■□□□ 1.16
CTCF-202ENST00000401394 RARRES1P49788 294 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 NOP14P78316 857 aaKnown RBP22.32■■□□□ 1.16
CTCF-202ENST00000401394 CDR2Q01850 454 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 SLC1A5Q15758 541 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 NFIL3Q16649 462 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 SYCP2LQ5T4T6 812 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 MIS18BP1Q6P0N0 1132 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 RBM15Q96T37 977 aaKnown RBP eCLIP22.32■■□□□ 1.16
CTCF-202ENST00000401394 C11orf70Q9BRQ4 267 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 SAYSD1Q9NPB0 183 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 WHRNQ9P202 907 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 SAE1Q9UBE0 346 aaPredicted RBP22.32■■□□□ 1.16
CTCF-202ENST00000401394 FDX1P10109 184 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 ATP2A2P16615 1042 aaKnown RBP22.32■■□□□ 1.16
CTCF-202ENST00000401394 SP8Q8IXZ3 490 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 GMCL1Q96IK5 515 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 NKIRAS1Q9NYS0 192 aa22.32■■□□□ 1.16
CTCF-202ENST00000401394 C2orf71A6NGG8 1288 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 NFIBO00712 420 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 UNC5CO95185 931 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 SP4Q02446 784 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 MTFR1Q15390 333 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 ANKMY2Q8IV38 441 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 CPXCR1Q8N123 301 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 DDX27Q96GQ7 796 aaKnown RBP22.31■■□□□ 1.16
CTCF-202ENST00000401394 TEKT3Q9BXF9 490 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 T-ENOLP0DO92 83 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 ITIH2P19823 946 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 TAF11Q15544 211 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 STXBP4Q6ZWJ1 553 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 SLC9A9Q8IVB4 645 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 C7orf43Q8WVR3 580 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 PRR11Q96HE9 360 aaPredicted RBP22.31■■□□□ 1.16
CTCF-202ENST00000401394 LARSQ9P2J5 1176 aaKnown RBP22.31■■□□□ 1.16
CTCF-202ENST00000401394 SEL1LQ9UBV2 794 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 DCTN4Q9UJW0 460 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 PHTF1Q9UMS5 762 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 FOCADQ5VW36 1801 aa22.31■■□□□ 1.16
CTCF-202ENST00000401394 GZMAP12544 262 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 CCND1P24385 295 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 HOXA10P31260 410 aaPredicted RBP22.3■■□□□ 1.16
CTCF-202ENST00000401394 ACAD10Q6JQN1 1059 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 SV2AQ7L0J3 742 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 MAB21L3Q8N8X9 362 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 ZDHHC15Q96MV8 337 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 BTAF1O14981 1849 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 ATP9AO75110 1047 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 PCNX4Q63HM2 1172 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 TXNRD3NBQ6F5E7 133 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 RFWD3Q6PCD5 774 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 C12orf50Q8NA57 414 aaPredicted RBP22.3■■□□□ 1.16
CTCF-202ENST00000401394 BSNDQ8WZ55 320 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 ACCSQ96QU6 501 aa22.3■■□□□ 1.16
CTCF-202ENST00000401394 SLC26A4O43511 780 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 GGPS1O95749 300 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 DSG3P32926 999 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 NRLP54845 237 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 PLEKHG4Q58EX7 1191 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 RFX8Q6ZV50 586 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 GMCL1P1Q8NEA9 526 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 PARD3BQ8TEW8 1205 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 MAGEB18Q96M61 343 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 FAM13CQ8NE31 585 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 KIAA1586Q9HCI6 787 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 SIPA1L1O43166 1804 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 EXOC1LA0A1B0GW35 172 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 RGL2O15211 777 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 MAGEA4P43358 317 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 MFAP3P55082 362 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 PTK6Q13882 451 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 SLC39A4Q6P5W5 647 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 ZNF365Q70YC5 407 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 MAML1Q92585 1016 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 METTL5Q9NRN9 209 aaKnown RBP22.29■■□□□ 1.16
CTCF-202ENST00000401394 DNPEPQ9ULA0 475 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 SUGT1Q9Y2Z0 365 aa22.29■■□□□ 1.16
CTCF-202ENST00000401394 PIK3CDO00329 1044 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 MTA2O94776 668 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 VIL1P09327 827 aaKnown RBP22.28■■□□□ 1.16
CTCF-202ENST00000401394 KRT15P19012 456 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 CNGA1P29973 690 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 RAD23BP54727 409 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 LACTBP83111 547 aaPredicted RBP22.28■■□□□ 1.16
CTCF-202ENST00000401394 ATP11AP98196 1134 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 TRAIPQ9BWF2 469 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 ZNFX1Q9P2E3 1918 aaKnown RBP22.28■■□□□ 1.16
CTCF-202ENST00000401394 PLS3P13797 630 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 ATF7P17544 494 aaPredicted RBP22.28■■□□□ 1.16
CTCF-202ENST00000401394 CLEC16AQ2KHT3 1053 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 LONP2Q86WA8 852 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 MCOLN2Q8IZK6 566 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms