RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 LOXHD1Q8IVV2 1947 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 COL2A1P02458 1487 aaPredicted RBP13.53□□□□□ -0.24
SHMT1-205ENST00000395684 A8MUI8 341 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 HGSO14964 777 aaPredicted RBP13.53□□□□□ -0.24
SHMT1-205ENST00000395684 ICAM1P05362 532 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 STX2P32856 288 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 MAN1A1P33908 653 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 CAP2P40123 477 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 CAV1Q03135 178 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 CYP24A1Q07973 514 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 NIPA1Q7RTP0 329 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 GBP7Q8N8V2 638 aaPredicted RBP13.53□□□□□ -0.24
SHMT1-205ENST00000395684 ANKLE1Q8NAG6 615 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 TMC2Q8TDI7 906 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 BSNDQ8WZ55 320 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 KLHL29Q96CT2 875 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 FAM212AQ96EL1 285 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 RXFP1Q9HBX9 757 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 LGALS13Q9UHV8 139 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 EXOC7Q9UPT5 735 aa13.53□□□□□ -0.24
SHMT1-205ENST00000395684 ANP32DO95626 131 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 CCNE2O96020 404 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 SLC1A1P43005 524 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 MYO1EQ12965 1108 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 MAIP1Q8WWC4 291 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 L3MBTL3Q96JM7 780 aaPredicted RBP13.52□□□□□ -0.24
SHMT1-205ENST00000395684 MAGEB18Q96M61 343 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 AVENQ9NQS1 362 aaPredicted RBP13.52□□□□□ -0.24
SHMT1-205ENST00000395684 ARHGEF3Q9NR81 526 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 EURLQ9NYK6 297 aa13.52□□□□□ -0.24
SHMT1-205ENST00000395684 UTRNP46939 3433 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 CDH16O75309 829 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 FDX1P10109 184 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 FOXN2P32314 431 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 GCNT1Q02742 428 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 PCNX4Q63HM2 1172 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 ANO5Q75V66 913 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 ASRGL1Q7L266 308 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 KIRREL3Q8IZU9 778 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 NSMCE1Q8WV22 266 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 POMGNT1Q8WZA1 660 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 TIPINQ9BVW5 301 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 QTRT2Q9H974 415 aaKnown RBP13.52□□□□□ -0.25
SHMT1-205ENST00000395684 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.52□□□□□ -0.25
SHMT1-205ENST00000395684 ADGRA3Q8IWK6 1321 aa13.52□□□□□ -0.25
SHMT1-205ENST00000395684 SPDYE2BA6NHP3 402 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 CFHP08603 1231 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 SPDYE6P0CI01 402 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 EIF2AK2P19525 551 aaKnown RBP13.51□□□□□ -0.25
SHMT1-205ENST00000395684 TAC1P20366 129 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 TAS2R40P59535 323 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 PSMC5P62195 406 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 CPXCR1Q8N123 301 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 FAM151AQ8WW52 585 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 ZNF516Q92618 1163 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 THOC1Q96FV9 657 aaKnown RBP13.51□□□□□ -0.25
SHMT1-205ENST00000395684 FAM81BQ96LP2 452 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 TAAR1Q96RJ0 339 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 TBC1D22BQ9NU19 505 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 UMODL1Q5DID0 1318 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 PROSCO94903 275 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 GTF2H1P32780 548 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 WDR4P57081 412 aaKnown RBP13.51□□□□□ -0.25
SHMT1-205ENST00000395684 CENPCQ03188 943 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 DMP1Q13316 513 aaPredicted RBP13.51□□□□□ -0.25
SHMT1-205ENST00000395684 MTFR1Q15390 333 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 CCNG2Q16589 344 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 IZUMO3Q5VZ72 239 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 ARHGEF18Q6ZSZ5 1173 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHMT1-205ENST00000395684 ECHDC2Q86YB7 292 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 SYTL5Q8TDW5 730 aaPredicted RBP13.51□□□□□ -0.25
SHMT1-205ENST00000395684 MIEF2Q96C03 454 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 KMT5AQ9NQR1 393 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 HOMER2Q9NSB8 354 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 TMOD2Q9NZR1 351 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 ZNF70Q9UC06 446 aaPredicted RBP13.51□□□□□ -0.25
SHMT1-205ENST00000395684 STK38LQ9Y2H1 464 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 CNTNAP1P78357 1384 aa13.51□□□□□ -0.25
SHMT1-205ENST00000395684 GBP2P32456 591 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 LMBRD2Q68DH5 695 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 ZNF365Q70YC5 407 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 RELL1Q8IUW5 271 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 SLC17A8Q8NDX2 589 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 CCHCR1Q8TD31 782 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 MAML1Q92585 1016 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 DONSONQ9NYP3 566 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 NKIRAS1Q9NYS0 192 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 SUFUQ9UMX1 484 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 PCDHB2Q9Y5E7 798 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 RASA4BC9J798 803 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 RASA4O43374 803 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 CYP1A1P04798 512 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 KLRC2P26717 231 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 SSTR3P32745 418 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 DSG3P32926 999 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 NSFP46459 744 aaKnown RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 PTP4A2Q12974 167 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 MKRN3Q13064 507 aaKnown RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 CYP4F22Q6NT55 531 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms