RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 DEPTORQ8TB45 409 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 BSNDQ8WZ55 320 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 NEUROG2Q9H2A3 272 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 KIAA0391O15091 583 aaKnown RBP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 USP2O75604 605 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 MTA2O94776 668 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 ECHS1P30084 290 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 COPB2P35606 906 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 PLTPP55058 493 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 STXBP2Q15833 593 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 ACAD10Q6JQN1 1059 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 TMC3Q7Z5M5 1100 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 HOOK3Q86VS8 718 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 OR2W6PQ8NHA6 318 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 HELQQ8TDG4 1101 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 KRT35Q92764 455 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 TRIM11Q96F44 468 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 FBXL18Q96ME1 805 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 A1CFQ9NQ94 594 aaKnown RBP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 CHORDC1Q9UHD1 332 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 SNX24Q9Y343 169 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 EXTL3O43909 919 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 KIAA0754O94854 1291 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 CYP1A2P05177 515 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 TPP2P29144 1249 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 MAPK4P31152 587 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 MAGEA8P43361 318 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 SCNN1BP51168 640 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 ENPEPQ07075 957 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 AGBL2Q5U5Z8 902 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 MICALCLQ6ZW33 695 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 EEPD1Q7L9B9 569 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 SPDYE1Q8NFV5 336 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 SEC14L1Q92503 715 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 GLG1Q92896 1179 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 C12orf42Q96LP6 360 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 NR2E1Q9Y466 385 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 LRRIQ4A6NIV6 560 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 SUPT20HL2P0C7V6 817 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 MDH1P40925 334 aaKnown RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 PIK3CAP42336 1068 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 GCNT1Q02742 428 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 DUPD1Q68J44 220 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 SLFN12LQ6IEE8 588 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 CCDC60Q8IWA6 550 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 EFCAB13Q8IY85 973 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 MAIP1Q8WWC4 291 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 ACP6Q9NPH0 428 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 CYP39A1Q9NYL5 469 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 PASKQ96RG2 1323 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 SPDYE16A6NNV3 312 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 BHMG1C9JSJ3 638 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 LSP1P33241 339 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 POU5F1Q01860 360 aaKnown RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 GUCY1A3Q02108 690 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 FOXD4Q12950 439 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 EMC2Q15006 297 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 RBBP5Q15291 538 aaKnown RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 SPDYCQ5MJ68 293 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 LIN9Q5TKA1 542 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 DENND2CQ68D51 928 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 CCDC137Q6PK04 289 aaKnown RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 SLC7A3Q8WY07 619 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 MPHOSPH6Q99547 160 aaKnown RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 ZNF302Q9NR11 478 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 FBXO40Q9UH90 709 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 ZNF214Q9UL59 606 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-204ENST00000392003 AFG3L2Q9Y4W6 797 aa10.29□□□□□ -0.76
COL6A3-204ENST00000392003 K7ERI5 159 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 LDHAP00338 332 aaKnown RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 DRG2P55039 364 aaKnown RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ZNF844Q08AG5 666 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 CALCOCO2Q13137 446 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 SETDB1Q15047 1291 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PPP1R7Q15435 360 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 UAP1Q16222 522 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 THEMIS2Q5TEJ8 643 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 SLC39A4Q6P5W5 647 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 CROCCP2Q86T23 111 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 SAPCD2Q86UD0 394 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 SLC13A5Q86YT5 568 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 DHX38Q92620 1227 aaKnown RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PI4K2AQ9BTU6 479 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ERVK-5Q9HDB9 667 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ANAPC7Q9UJX3 599 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 AGO2Q9UKV8 859 aaKnown RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 NOVA2Q9UNW9 492 aaKnown RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PCDHA3Q9Y5H8 950 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 GRIN2DO15399 1336 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 SPATA31C2B4DYI2 1134 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 CTNNA2P26232 953 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 FLT3P36888 993 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 NSFP46459 744 aaKnown RBP10.28□□□□□ -0.76
COL6A3-204ENST00000392003 MARCKSL1P49006 195 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 PMS2P54278 862 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 CLEC16AQ2KHT3 1053 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 AADACL2Q6P093 401 aa10.28□□□□□ -0.76
COL6A3-204ENST00000392003 ABHD15Q6UXT9 468 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms