RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RAD51Q06609 339 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 GTF2H3Q13889 308 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 FBXW10Q5XX13 1052 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 ATPAF2Q8N5M1 289 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 RAET1EQ8TD07 263 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 CYFIP2Q96F07 1278 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 KDM5DQ9BY66 1539 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 SHANK2Q9UPX8 1470 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 MYBL1P10243 752 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 GYS1P13807 737 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 SFNP31947 248 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 HSD17B4P51659 736 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 PLD3Q8IV08 490 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 OTUB1Q96FW1 271 aaPredicted RBP14.41□□□□□ -0.1
COL4A1-201ENST00000375820 PI4K2AQ9BTU6 479 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 JPH1Q9HDC5 661 aaPredicted RBP14.41□□□□□ -0.1
COL4A1-201ENST00000375820 DAB1O75553 588 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 SLC16A1P53985 500 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 CYP4A22Q5TCH4 519 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 VSNL1P62760 191 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 FUT11Q495W5 492 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 SPATA21Q7Z572 469 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 ARHGAP18Q8N392 663 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 TFR2Q9UP52 801 aa14.41□□□□□ -0.1
COL4A1-201ENST00000375820 EFCAB14O75071 495 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 ZC2HC1CQ53FD0 456 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 OLFML2BQ68BL8 750 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 IPMKQ8NFU5 416 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 MAP3K20Q9NYL2 800 aaKnown RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 XPO1O14980 1071 aaKnown RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 ORC1Q13415 861 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 MB21D2Q8IYB1 491 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 SRBD1Q8N5C6 995 aaKnown RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 RIN2Q8WYP3 895 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 TSSK1BQ9BXA7 367 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 EXOSC4Q9NPD3 245 aaKnown RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 CHUKO15111 745 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 HIST1H2AGP0C0S8 130 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 PDGFRAP16234 1089 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 HIST1H2ADP20671 130 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 MGAT5BQ3V5L5 792 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 CEP55Q53EZ4 464 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 RFFLQ8WZ73 363 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 FAM136AQ96C01 138 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 HIST1H2AHQ96KK5 128 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 HIST1H2AJQ99878 128 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 H2AFJQ9BTM1 129 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 GOLPH3Q9H4A6 298 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 ZBTB39O15060 712 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 NDUFS3O75489 264 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 CAPZA2P47755 286 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 STAT5BP51692 787 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 SCARF1Q14162 830 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 C1orf131Q8NDD1 294 aaKnown RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 THTPAQ9BU02 230 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 FAM96AQ9H5X1 160 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 PRR23D1E9PI22 279 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 DYNC1LI2O43237 492 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 RTN2O75298 545 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 WEE2P0C1S8 567 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 PRR23D2P0DMB1 279 aaPredicted RBP14.4□□□□□ -0.1
COL4A1-201ENST00000375820 STX19Q8N4C7 294 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 SLC7A14Q8TBB6 771 aa14.4□□□□□ -0.1
COL4A1-201ENST00000375820 GRID2IPA4D2P6 1211 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 EEF2KO00418 725 aaKnown RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 PRRG1O14668 218 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 ZNF263O14978 683 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 CCDC22O60826 627 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 MAP3K6O95382 1288 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 CYBBP04839 570 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 CCDC81Q6ZN84 652 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 ZC3H7BQ9UGR2 993 aaKnown RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 COL15A1P39059 1388 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 PVALEFA0A1B0GWK0 134 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 TNPO2O14787 897 aaKnown RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 MLH1P40692 756 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 LRRC71Q8N4P6 559 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 RAB42Q8N4Z0 105 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 ZNF579Q8NAF0 562 aaKnown RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 SPATA4Q8NEY3 305 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 ASAP3Q8TDY4 903 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 PAWRQ96IZ0 340 aaKnown RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 L3MBTL3Q96JM7 780 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 KLC4Q9NSK0 619 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 C3orf70A6NLC5 250 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 UBTFL6P0CB48 400 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 PLOD1Q02809 727 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 MFSD4BQ5TF39 518 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 CDR2LQ86X02 465 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 C18orf8Q96DM3 657 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 ZNF512Q96ME7 567 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 GSG1L2A8MUP6 293 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 RIN3Q8TB24 985 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 GPBP1L1Q9HC44 474 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 ZBTB12Q9Y330 459 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 FAM32AQ9Y421 112 aaKnown RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 PCDHA10Q9Y5I2 948 aa14.39□□□□□ -0.11
COL4A1-201ENST00000375820 MZF1P28698 734 aaPredicted RBP14.39□□□□□ -0.11
COL4A1-201ENST00000375820 AGPAT5Q9NUQ2 364 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms