RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 UPP1Q16831 310 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 SLC5A9Q2M3M2 681 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 ZNF568Q3ZCX4 644 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 EEF1DP3Q658K8 133 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 LAIR1Q6GTX8 287 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 CSGALNACT1Q8TDX6 532 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 DEPDC1BQ8WUY9 529 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 FAM3CQ92520 227 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 PPP1R10Q96QC0 940 aaKnown RBP15.5■□□□□ 0.07
PTCH1-202ENST00000375271 TCHPQ9BT92 498 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 POLR3CQ9BUI4 534 aaPredicted RBP15.5■□□□□ 0.07
PTCH1-202ENST00000375271 KIFC3Q9BVG8 833 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 GOLGA2P5Q9HBQ8 144 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 AVENQ9NQS1 362 aaPredicted RBP15.5■□□□□ 0.07
PTCH1-202ENST00000375271 USP20Q9Y2K6 914 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 COL4A3Q01955 1670 aa15.5■□□□□ 0.07
PTCH1-202ENST00000375271 ARHGEF37A1IGU5 675 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 DCDC2BA2VCK2 349 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 TTLL13PA6NNM8 815 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 CCDC169A6NNP5 214 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 PODXLO00592 558 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 ZNF263O14978 683 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 SYN3O14994 580 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 LILRB5O75023 590 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 MED24O75448 989 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 CPB1P15086 417 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 MCM4P33991 863 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 OSTNP61366 133 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 NAB2Q15742 525 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 CTXN3Q4LDR2 81 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 ZNF280DQ6N043 979 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.49■□□□□ 0.07
PTCH1-202ENST00000375271 CELF5Q8N6W0 485 aaKnown RBP15.49■□□□□ 0.07
PTCH1-202ENST00000375271 LEMD2Q8NC56 503 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 APPL2Q8NEU8 664 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 BSNDQ8WZ55 320 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 TNFRSF25Q93038 417 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 CHAMP1Q96JM3 812 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 MTMR9Q96QG7 549 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 CCDC113Q9H0I3 377 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 CHRDQ9H2X0 955 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 ASAH2Q9NR71 780 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 INSL5Q9Y5Q6 135 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 PIAS3Q9Y6X2 628 aa15.49■□□□□ 0.07
PTCH1-202ENST00000375271 SMIM28A0A1B0GU29 152 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 OR52Z1P0C646 297 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 SPATA31C1P0DKV0 1188 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 HARSP12081 509 aaKnown RBP15.48■□□□□ 0.07
PTCH1-202ENST00000375271 MYL4P12829 197 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 ATF2P15336 505 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 PSMC3P17980 439 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 RPA1P27694 616 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 MARCKSP29966 332 aaPredicted RBP15.48■□□□□ 0.07
PTCH1-202ENST00000375271 CCT6AP40227 531 aaKnown RBP15.48■□□□□ 0.07
PTCH1-202ENST00000375271 SPEM2Q0P670 501 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 DMP1Q13316 513 aaPredicted RBP15.48■□□□□ 0.07
PTCH1-202ENST00000375271 LRRC32Q14392 662 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 FAM78AQ5JUQ0 283 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 TPGS2Q68CL5 300 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 SLC8B1Q6J4K2 584 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 C1orf228Q6PIY5 440 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 NECAB1Q8N987 351 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 NETO1Q8TDF5 533 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 SMARCD2Q92925 531 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 MRPL4Q9BYD3 311 aaKnown RBP15.48■□□□□ 0.07
PTCH1-202ENST00000375271 RAB34Q9BZG1 259 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 PLA2G2FQ9BZM2 168 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 LMAN1LQ9HAT1 526 aa15.48■□□□□ 0.07
PTCH1-202ENST00000375271 NCOR2Q9Y618 2525 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 WDR27A2RRH5 827 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 MICAL2O94851 1124 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 CTDNEP1O95476 244 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 GRM5P41594 1212 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 MATR3P43243 847 aaKnown RBP eCLIP15.47■□□□□ 0.07
PTCH1-202ENST00000375271 CXCL12P48061 93 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 KPNA1P52294 538 aaPredicted RBP15.47■□□□□ 0.07
PTCH1-202ENST00000375271 SIM2Q14190 667 aaPredicted RBP15.47■□□□□ 0.07
PTCH1-202ENST00000375271 TCEAL8Q8IYN2 117 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 GTF3C6Q969F1 213 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 E2F7Q96AV8 911 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 MSANTD3Q96H12 275 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 ASB16Q96NS5 453 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 ACAP3Q96P50 834 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 CXCL16Q9H2A7 254 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 TMEM60Q9H2L4 133 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 BHMT2Q9H2M3 363 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 TNFSF13BQ9Y275 285 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 STK24Q9Y6E0 443 aa15.47■□□□□ 0.07
PTCH1-202ENST00000375271 DPYSL4O14531 572 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 FOXD2O60548 495 aaPredicted RBP15.46■□□□□ 0.07
PTCH1-202ENST00000375271 LRP3O75074 770 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 RETP07949 1114 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 MUTP22033 750 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 RPL9P32969 192 aaKnown RBP15.46■□□□□ 0.07
PTCH1-202ENST00000375271 TWF1Q12792 350 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 PLD1Q13393 1074 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 ORC2Q13416 577 aaPredicted RBP15.46■□□□□ 0.07
PTCH1-202ENST00000375271 CEP68Q76N32 757 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 HAUS6Q7Z4H7 955 aa15.46■□□□□ 0.07
PTCH1-202ENST00000375271 C3orf58Q8NDZ4 430 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms