RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 WRNIP1Q96S55 665 aa11.82□□□□□ -0.52
CCDC40-203ENST00000374877 PICK1Q9NRD5 415 aa11.82□□□□□ -0.52
CCDC40-203ENST00000374877 PRKAG3Q9UGI9 489 aa11.82□□□□□ -0.52
CCDC40-203ENST00000374877 FEM1BQ9UK73 627 aa11.82□□□□□ -0.52
CCDC40-203ENST00000374877 WDR46O15213 610 aaKnown RBP11.81□□□□□ -0.52
CCDC40-203ENST00000374877 HIP1RO75146 1068 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 ATF2P15336 505 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 VAMP7P51809 220 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 SLC47A2Q86VL8 602 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 MORC4Q8TE76 937 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 SNF8Q96H20 258 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 PLVAPQ9BX97 442 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 LRRC19Q9H756 370 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 TP73O15350 636 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 UNC5CO95185 931 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 CHRNB2P17787 502 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 ITIH2P19823 946 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 STRN3Q13033 797 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.81□□□□□ -0.52
CCDC40-203ENST00000374877 C9orf72Q96LT7 481 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 MAGEB18Q96M61 343 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 RAB3IPQ96QF0 476 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-203ENST00000374877 KIF9Q9HAQ2 790 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 TUFT1Q9NNX1 390 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 SEL1LQ9UBV2 794 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 ANAPC5Q9UJX4 755 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 CETPP11597 493 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 CIITAP33076 1130 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 STAT2P52630 851 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 MKRN3Q13064 507 aaKnown RBP11.81□□□□□ -0.52
CCDC40-203ENST00000374877 SETDB1Q15047 1291 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 TMED2Q15363 201 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 OTOP1Q7RTM1 612 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 ARMC2Q8NEN0 867 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 ERP27Q96DN0 273 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 TMEM237Q96Q45 408 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 FAM118BQ9BPY3 351 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 NINJ2Q9NZG7 142 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 NAALADL1Q9UQQ1 740 aa11.81□□□□□ -0.52
CCDC40-203ENST00000374877 GAS7O60861 476 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 USP2O75604 605 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 SMNDC1O75940 238 aaKnown RBP eCLIP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 GAS8O95995 478 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 CFBP00751 764 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 PTPRAP18433 802 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 MTFR1Q15390 333 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 ZNF568Q3ZCX4 644 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 CYP4F22Q6NT55 531 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 PHLDB2Q86SQ0 1253 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 C12orf50Q8NA57 414 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 UBE4BO95155 1302 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 ARHGEF35A5YM69 484 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 RASA4BC9J798 803 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 RASA4O43374 803 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 SPAG7O75391 227 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 UPP2O95045 317 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 TARSP26639 723 aaKnown RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 FOXN2P32314 431 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 IRX1P78414 480 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 RNASELQ05823 741 aaKnown RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 RNF43Q68DV7 783 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 RHBDF2Q6PJF5 856 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 PRUNE1Q86TP1 453 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 ANKLE1Q8NAG6 615 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 C12orf42Q96LP6 360 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 CBWD1Q9BRT8 395 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 YIPF3Q9GZM5 350 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 MYLK2Q9H1R3 596 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 TXLNGQ9NUQ3 528 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 WRAP73Q9P2S5 460 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 PRR12Q9ULL5 1215 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 ENO4A6NNW6 628 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 ADM5C9JUS6 153 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 CDH16O75309 829 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 CCNB1P14635 433 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 TAC1P20366 129 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 MXI1P50539 228 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 IL9RQ01113 521 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 DNAJC3Q13217 504 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 PRAMEF18Q5VWM3 479 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 PPP1R21Q6ZMI0 780 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 ELMO3Q96BJ8 720 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 SAAL1Q96ER3 474 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 NACC1Q96RE7 527 aa11.8□□□□□ -0.52
CCDC40-203ENST00000374877 GLIS2Q9BZE0 524 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 NKX1-2Q9UD57 310 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 NOCTQ9UK39 431 aaKnown RBP11.8□□□□□ -0.52
CCDC40-203ENST00000374877 PAPPA2Q9BXP8 1791 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 C19orf81C9J6K1 198 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 MTA2O94776 668 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 GZMAP12544 262 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 TCEAL1Q15170 157 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 MIS18BP1Q6P0N0 1132 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 ZNF449Q6P9G9 518 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 TRMT1LQ7Z2T5 733 aaKnown RBP11.79□□□□□ -0.52
CCDC40-203ENST00000374877 ZNF280CQ8ND82 737 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 ZSWIM2Q8NEG5 633 aa11.79□□□□□ -0.52
CCDC40-203ENST00000374877 UTP4Q969X6 686 aaKnown RBP11.79□□□□□ -0.52
CCDC40-203ENST00000374877 NAF1Q96HR8 494 aaKnown RBP11.79□□□□□ -0.52
CCDC40-203ENST00000374877 CCDC77Q9BR77 488 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms