RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RSPO2Q6UXX9 243 aaPredicted RBP23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 KRI1Q8N9T8 703 aaKnown RBP23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 KCNK12Q9HB15 430 aa23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 EPS15L1Q9UBC2 864 aa23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 CDY1Q9Y6F8 540 aa23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 PDCD11Q14690 1871 aaKnown RBP23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 SYN3O14994 580 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 FAM189A1O60320 539 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 NMT1P30419 496 aaKnown RBP23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 HOXA9P31269 272 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 TXLNAP40222 546 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 TNFSF9P41273 254 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 UVSSAQ2YD98 709 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 PPM1LQ5SGD2 360 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 RRAGBQ5VZM2 374 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 MAP4K3Q8IVH8 894 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 MYADMQ96S97 322 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 ST6GALNAC4Q9H4F1 302 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 IGSF9Q9P2J2 1179 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 TUBGCP4Q9UGJ1 667 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 NUB1Q9Y5A7 615 aa23.66■■□□□ 1.38
CCDC28B-201ENST00000373602 TRIOO75962 3097 aa23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 A0A0B4J269 797 aa23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 OGTO15294 1046 aa23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 NASPP49321 788 aaPredicted RBP23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 TDGQ13569 410 aa23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 VARS2Q5ST30 1063 aaKnown RBP23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 SLC39A4Q6P5W5 647 aa23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 RTL10Q7L3V2 364 aa23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.65■■□□□ 1.38
CCDC28B-201ENST00000373602 MUC6Q6W4X9 2439 aa23.64■■□□□ 1.38
CCDC28B-201ENST00000373602 PDGFBP01127 241 aaPredicted RBP23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 POU2F2P09086 479 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 CYP3A5P20815 502 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 PPP2R3AQ06190 1150 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 ZBTB6Q15916 424 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 ZBTB41Q5SVQ8 909 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 AXDND1Q5T1B0 1012 aaPredicted RBP23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 SLC8B1Q6J4K2 584 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 DYMQ7RTS9 669 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 SLC7A14Q8TBB6 771 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 SUSD3Q96L08 255 aa23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 UBQLN1Q9UMX0 589 aaKnown RBP23.64■■□□□ 1.37
CCDC28B-201ENST00000373602 MYMKA6NI61 221 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 LACTBL1A8MY62 500 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 TBC1D4O60343 1298 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 ADRB2P07550 413 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 LRPAP1P30533 357 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 SPAG1Q07617 926 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 MRPL58Q14197 206 aaKnown RBP23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 ENOX2Q16206 610 aaKnown RBP23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 ZC2HC1CQ53FD0 456 aaPredicted RBP23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 CCDC73Q6ZRK6 1079 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 SV2BQ7L1I2 683 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 ZNF720Q7Z2F6 126 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 GRASPQ7Z6J2 395 aaPredicted RBP23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 SFR1Q86XK3 245 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 DDX12PQ92771 950 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 KIF12Q96FN5 646 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 TSPAN18Q96SJ8 248 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 MSTO1Q9BUK6 570 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 RPF1Q9H9Y2 349 aaKnown RBP23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 ZDBF2Q9HCK1 2354 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 DOCK8Q8NF50 2099 aa23.63■■□□□ 1.37
CCDC28B-201ENST00000373602 H7C4K7 107 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 CCL16O15467 120 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 XYLBO75191 536 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 AVPR2P30518 371 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 MCM4P33991 863 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 VCPP55072 806 aaKnown RBP23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 ROR1Q01973 937 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 IER5LQ5T953 404 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 GET4Q7L5D6 327 aaPredicted RBP23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 TMEM130Q8N3G9 435 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 ZNF461Q8TAF7 563 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 DNAJC19Q96DA6 116 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 SEL1LQ9UBV2 794 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 CPSF3Q9UKF6 684 aaKnown RBP23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 DUSP12Q9UNI6 340 aa23.62■■□□□ 1.37
CCDC28B-201ENST00000373602 ANKRD63C9JTQ0 380 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 ABLIM3O94929 683 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 LAMP2P13473 410 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 FSHRP23945 695 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 STK38Q15208 465 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 CD302Q8IX05 232 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 LINC00301Q8NCQ3 95 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 NXPE3Q969Y0 559 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 HVCN1Q96D96 273 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 PRRX2Q99811 253 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 STRA6Q9BX79 667 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 PCDHB8Q9UN66 801 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 STYXL1Q9Y6J8 313 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 KMT2EQ8IZD2 1858 aa23.61■■□□□ 1.37
CCDC28B-201ENST00000373602 A0A087X0B3 334 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 WDR27A2RRH5 827 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 XPOTO43592 962 aaKnown RBP23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 PPP1R37O75864 691 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 GAP43P17677 238 aa23.6■■□□□ 1.37
CCDC28B-201ENST00000373602 NTHL1P78549 312 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms