RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 RBM43Q6ZSC3 357 aaKnown RBP5.43□□□□□ -1.54
UBE3D-202ENST00000369746 NANOGNBQ7Z5D8 188 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 GRAMD2AQ8IUY3 354 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 TTC39CQ8N584 583 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 NAXEQ8NCW5 288 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 FAM174AQ8TBP5 190 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 CACTINQ8WUQ7 758 aaKnown RBP5.43□□□□□ -1.54
UBE3D-202ENST00000369746 LRRN4Q8WUT4 740 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 SHC3Q92529 594 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 ZNF653Q96CK0 615 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 HERC2P3Q9BVR0 1158 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 EIF2AQ9BY44 585 aaKnown RBP5.43□□□□□ -1.54
UBE3D-202ENST00000369746 NSRP1Q9H0G5 558 aaKnown RBP5.43□□□□□ -1.54
UBE3D-202ENST00000369746 TNKS2Q9H2K2 1166 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 BRD9Q9H8M2 597 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 DMAP1Q9NPF5 467 aaPredicted RBP5.43□□□□□ -1.54
UBE3D-202ENST00000369746 HELLSQ9NRZ9 838 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 TIMM22Q9Y584 194 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 ATP6V1DQ9Y5K8 247 aa5.43□□□□□ -1.54
UBE3D-202ENST00000369746 KBTBD13C9JR72 458 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CACNB4O00305 520 aaPredicted RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 LSM1O15116 133 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 AP5Z1O43299 807 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 DCXO43602 365 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 STX6O43752 255 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ZBTB14O43829 449 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 SIN3BO75182 1162 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 PRPF6O94906 941 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 DDX58O95786 925 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 TIMP1P01033 207 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 SKIP12755 728 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 IGHMBP2P38935 993 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 NRLP54845 237 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 OXCT1P55809 520 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CTSWP56202 376 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CCZ1BP86790 482 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CCZ1P86791 482 aaPredicted RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 KIF5AQ12840 1032 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 SHHQ15465 462 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 DOK7Q18PE1 504 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 MFSD5Q6N075 450 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 NEK5Q6P3R8 708 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 NCCRP1Q6ZVX7 275 aaPredicted RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 RNF180Q86T96 592 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ARHGAP18Q8N392 663 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ZNF579Q8NAF0 562 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ACMSDQ8TDX5 336 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 WHAMMQ8TF30 809 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 COG1Q8WTW3 980 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 C8orf76Q96K31 380 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 TMEM237Q96Q45 408 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 SLC9A7Q96T83 725 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ZPBPQ9BS86 351 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 OXCT2Q9BYC2 517 aaPredicted RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 NAT10Q9H0A0 1025 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ZBTB40Q9NUA8 1239 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 RTEL1Q9NZ71 1219 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 PTBP2Q9UKA9 531 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 MTUS1Q9ULD2 1270 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CRYL1Q9Y2S2 319 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 C15orf41Q9Y2V0 281 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 RRN3P2A6NIE6 340 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 LRRIQ3A6PVS8 624 aaPredicted RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 USP17L5A8MUK1 530 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 EIF3HO15372 352 aaKnown RBP eCLIP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 RIPK2O43353 540 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 BRINP1O60477 761 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 MGEA5O60502 916 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 SOCS5O75159 536 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CLTBP09497 229 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 GNAT1P11488 350 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 YBEYP58557 167 aaPredicted RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 TUBA1BP68363 451 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CTDSPL2Q05D32 466 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 EHHADHQ08426 723 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 C17orf67Q0P5P2 114 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 AP3B2Q13367 1082 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 XRCC4Q13426 336 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 SPIDRQ14159 915 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 COG2Q14746 738 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CNSTQ6PJW8 725 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 TUBA1AQ71U36 451 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 SH3BP5LQ7L8J4 393 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 TMEM199Q8N511 208 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ZGPATQ8N5A5 531 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 CCDC155Q8N6L0 562 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ANAPC16Q96DE5 110 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 BPIFA3Q9BQP9 254 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 NAA15Q9BXJ9 866 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 NACAP1Q9BZK3 213 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ABCB6Q9NP58 842 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 BZW2Q9Y6E2 419 aaKnown RBP5.42□□□□□ -1.54
UBE3D-202ENST00000369746 PLXNA3P51805 1871 aa5.42□□□□□ -1.54
UBE3D-202ENST00000369746 ADAMTS4O75173 837 aa5.41□□□□□ -1.54
UBE3D-202ENST00000369746 DNAJC8O75937 253 aaPredicted RBP5.41□□□□□ -1.54
UBE3D-202ENST00000369746 NPPAP01160 153 aa5.41□□□□□ -1.54
UBE3D-202ENST00000369746 C6orf222P0C671 652 aaPredicted RBP5.41□□□□□ -1.54
UBE3D-202ENST00000369746 LINGO3P0C6S8 592 aa5.41□□□□□ -1.54
UBE3D-202ENST00000369746 CPA3P15088 417 aa5.41□□□□□ -1.54
UBE3D-202ENST00000369746 HNF1BP35680 557 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms