RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DHX33Q9H6R0 707 aaKnown RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 RASAL2Q9UJF2 1139 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 DIS3Q9Y2L1 958 aaKnown RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 LOXHD1Q8IVV2 1947 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 CST3P01034 146 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 LSP1P33241 339 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 NOP14P78316 857 aaKnown RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 IRX5P78411 483 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 LBX2Q6XYB7 198 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 RNF149Q8NC42 400 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 MDM1Q8TC05 714 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 CCDC114Q96M63 670 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 NLRP4Q96MN2 994 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 RPS6KC1Q96S38 1066 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 SEMA4AQ9H3S1 761 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 CHST7Q9NS84 486 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 LTBP3Q9NS15 1303 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 E7EVH7 732 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 ERLIN2O94905 339 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 PTGIRP43119 386 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 GCNT1Q02742 428 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 PSMD6Q15008 389 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 SGO2Q562F6 1265 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 FBXO16Q8IX29 292 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 BBXQ8WY36 941 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 CD101Q93033 1021 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 ACSF2Q96CM8 615 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-201ENST00000341247 MTMR12Q9C0I1 747 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 CCDC113Q9H0I3 377 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 MTUS1Q9ULD2 1270 aa11.05□□□□□ -0.64
LIMA1-201ENST00000341247 MROH7Q68CQ1 1323 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 MYPNQ86TC9 1320 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 NOP56O00567 594 aaKnown RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 RPS6KA5O75582 802 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 COILP38432 576 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 TFAMQ00059 246 aaKnown RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ORC1Q13415 861 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 CUL2Q13617 745 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 GJC2Q5T442 439 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ZDHHC24Q6UX98 284 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 RHPN2Q8IUC4 686 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 SULF1Q8IWU6 871 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 AZI2Q9H6S1 392 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 TXNRD2Q9NNW7 524 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ADAM22Q9P0K1 906 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ASIC3Q9UHC3 531 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 PCDHB2Q9Y5E7 798 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 PCDHA3Q9Y5H8 950 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 LOC285556D6RIA3 1793 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 PI4K2BG5E9Z4 385 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 EBAG9O00559 213 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ATP2A1O14983 1001 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 PMM2O15305 246 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 CAND2O75155 1236 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 WEE2P0C1S8 567 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 CHRNA3P32297 505 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 NAMPTP43490 491 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 PMS2P54278 862 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 NCOA4Q13772 614 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 SLC29A2Q14542 456 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 Q3C1V9 767 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ATP13A4Q4VNC1 1196 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 KAZNQ674X7 775 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 CHADLQ6NUI6 762 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 KDM7AQ6ZMT4 941 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 CEP120Q8N960 986 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 RBBP8NLQ8NC74 664 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 CHST13Q8NET6 341 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 PWWP2AQ96N64 755 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 NRBP2Q9NSY0 501 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ZDHHC18Q9NUE0 388 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 UVRAGQ9P2Y5 699 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 HMGB1P1B2RPK0 211 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 UNGP13051 313 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 GTF2H1P32780 548 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 ARL2P36404 184 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 HADHBP55084 474 aaKnown RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 MTMR3Q13615 1198 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 CD302Q8IX05 232 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 TMEM174Q8WUU8 243 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 RNF25Q96BH1 459 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-201ENST00000341247 GRHL1Q9NZI5 618 aa11.04□□□□□ -0.64
LIMA1-201ENST00000341247 MDH1P40925 334 aaKnown RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 SKOR1P84550 965 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 DHX34Q14147 1143 aaKnown RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 C15orf39Q6ZRI6 1047 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 DCPSQ96C86 337 aaKnown RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 R3HDM2Q9Y2K5 976 aaKnown RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 MCM3APO60318 1980 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 A0A0B4J269 797 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 H0YCG3 227 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 INO80B-WBP1J3KQ70 363 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 KRT19P08727 400 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 TCF4P15884 667 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 BRD2P25440 801 aaKnown RBP11.03□□□□□ -0.64
LIMA1-201ENST00000341247 RTP1P59025 263 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 TAS2R40P59535 323 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 MYL6P60660 151 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 CCDC38Q502W7 563 aa11.03□□□□□ -0.64
LIMA1-201ENST00000341247 GPC2Q8N158 579 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms