RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 IZUMO3Q5VZ72 239 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 ZNF564Q8TBZ8 553 aaPredicted RBP13.45□□□□□ -0.26
USP47-202ENST00000339865 PAIP1Q9H074 479 aaKnown RBP13.45□□□□□ -0.26
USP47-202ENST00000339865 VTA1Q9NP79 307 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 MYH3P11055 1940 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 PDIA3P30101 505 aaKnown RBP13.45□□□□□ -0.26
USP47-202ENST00000339865 DOK7Q18PE1 504 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 ZNF699Q32M78 642 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 MIER2Q8N344 545 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 TERB1Q8NA31 727 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 PARVAQ9NVD7 372 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 FANCD2Q9BXW9 1451 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 PSTPIP1O43586 416 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 MFAP3LO75121 409 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 S100A1P23297 94 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 C1DQ13901 141 aaKnown RBP13.45□□□□□ -0.26
USP47-202ENST00000339865 MACC1Q6ZN28 852 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 SYTL1Q8IYJ3 562 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 TBC1D19Q8N5T2 526 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 C2orf69Q8N8R5 385 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 UPP2O95045 317 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 GNAT1P11488 350 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 CBFBQ13951 182 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 ULK3Q6PHR2 472 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 SLC44A2Q8IWA5 706 aaPredicted RBP13.45□□□□□ -0.26
USP47-202ENST00000339865 MS4A14Q96JA4 679 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 ROGDIQ9GZN7 287 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 KIF24Q5T7B8 1368 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 GRXCR2A6NFK2 248 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 MIF4GDA9UHW6 222 aaKnown RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 SRP72O76094 671 aaKnown RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 ALOX12P18054 663 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 CCND2P30279 289 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 CPA2P48052 419 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 TASP1Q9H6P5 420 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 C8orf4Q9NR00 106 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 LATS2Q9NRM7 1088 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 AMACRQ9UHK6 382 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 PPIEQ9UNP9 301 aaKnown RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 ASMTLO95671 621 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 CLPTM1O96005 669 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 NDUFAF6Q330K2 333 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 IKBIPQ70UQ0 350 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 PDP2Q9P2J9 529 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 IGF2BP3O00425 579 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP47-202ENST00000339865 TPD52L2O43399 206 aaKnown RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 NCK2O43639 380 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 CALB1P05937 261 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 SESN2P58004 480 aaPredicted RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 TNFAIP1Q13829 316 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 RBBP8NLQ8NC74 664 aaPredicted RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 CAPSLQ8WWF8 208 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 MPP4Q96JB8 637 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 CYLDQ9NQC7 956 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 ATAD3AQ9NVI7 634 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 TNFRSF21O75509 655 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 NUDT2P50583 147 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 ACTR2P61160 394 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 THUMPD3Q9BV44 507 aaKnown RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 DHX35Q9H5Z1 703 aaKnown RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 BCL10O95999 233 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 KCTD21Q4G0X4 260 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 SLC27A3Q5K4L6 730 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 SNX31Q8N9S9 440 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 KPNA4O00629 521 aaPredicted RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 SNUPNO95149 360 aaKnown RBP13.44□□□□□ -0.26
USP47-202ENST00000339865 ATP1A3P13637 1013 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 ZNF23P17027 643 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 POU1F1P28069 291 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 HOXD10P28358 340 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 PHKA1P46020 1223 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 LONRF1Q17RB8 773 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 ZNF667Q5HYK9 610 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 C12orf60Q5U649 245 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 KIAA0825Q8IV33 1275 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 ATP8B4Q8TF62 1192 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 JADE3Q92613 823 aa13.44□□□□□ -0.26
USP47-202ENST00000339865 LSP1P33241 339 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 KCNJ6P48051 423 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 RFX3P48380 749 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 ABCB5Q2M3G0 1257 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 OTOAQ7RTW8 1153 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 AMNQ9BXJ7 453 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 CD274Q9NZQ7 290 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 ZNF284Q2VY69 593 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 SLFN13Q68D06 897 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 PGBD2Q6P3X8 592 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 TSHZ1Q6ZSZ6 1077 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.43□□□□□ -0.26
USP47-202ENST00000339865 RDM1Q8NG50 284 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 SPATA16Q9BXB7 569 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 WDR11Q9BZH6 1224 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 WNT8AQ9H1J5 351 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 FBXL21Q9UKT6 434 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 LOC100653049A0A140TA62 436 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 A0A1W2PQ27 194 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 A0A1W2PQ64 194 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 A0A1W2PQD8 194 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 KRT34O76011 436 aa13.43□□□□□ -0.26
USP47-202ENST00000339865 PGK2P07205 417 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms