RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 TTC23LQ6PF05 361 aa3.46□□□□□ -1.85
CSMD3-202ENST00000339701 TOGARAM2Q6ZUX3 1019 aa3.46□□□□□ -1.85
CSMD3-202ENST00000339701 CEP19Q96LK0 163 aa3.46□□□□□ -1.85
CSMD3-202ENST00000339701 COLEC11Q9BWP8 271 aa3.46□□□□□ -1.85
CSMD3-202ENST00000339701 CXorf56Q9H5V9 222 aa3.46□□□□□ -1.85
CSMD3-202ENST00000339701 CEP72Q9P209 647 aa3.46□□□□□ -1.85
CSMD3-202ENST00000339701 CD163L1Q9NR16 1453 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SEC31AO94979 1220 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 NR4A1P22736 598 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CDC27P30260 824 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 GPSM2P81274 684 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 RBM10P98175 930 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 FPGSQ05932 587 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SNX1Q13596 522 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 BTG3Q14201 252 aaPredicted RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SGSM1Q2NKQ1 1148 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SPDYCQ5MJ68 293 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SCFD1Q8WVM8 642 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 HDAC2Q92769 488 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 DEFB118Q96PH6 123 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 MEIS3Q99687 375 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 APOL4Q9BPW4 351 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TEKT3Q9BXF9 490 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ALDH8A1Q9H2A2 487 aaPredicted RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TMEM245Q9H330 911 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CCDC134Q9H6E4 229 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 C11orf49Q9H6J7 331 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ING3Q9NXR8 418 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ANKFY1Q9P2R3 1169 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 STOML2Q9UJZ1 356 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 AXIN2Q9Y2T1 843 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 APOEP02649 317 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 RALBP11234 206 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CTNNB1P35222 781 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CCZ1BP86790 482 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CCZ1P86791 482 aaPredicted RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CUL3Q13618 768 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CYP4F22Q6NT55 531 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 UTS2BQ765I0 119 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TRMT2AQ8IZ69 625 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PCYOX1LQ8NBM8 494 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 HPS1Q92902 700 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 OSBPL1AQ9BXW6 950 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 DCTPP1Q9H773 170 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 APOBEC2Q9Y235 224 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 POTEFA5A3E0 1075 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 GPR182O15218 404 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 RGS5O15539 181 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 FOXD2O60548 495 aaPredicted RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 INHBAP08476 426 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 POTEIP0CG38 1075 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ACADSP16219 412 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CTNNA1P35221 906 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SERPINB6P35237 376 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PPM1AP35813 382 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 GUCY1A3Q02108 690 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TBC1D25Q3MII6 688 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PDXDC2PQ6P474 469 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 DCUN1D2Q6PH85 259 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 POTEEQ6S8J3 1075 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TRIM48Q8IWZ4 208 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 NEDD1Q8NHV4 660 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SPATA18Q8TC71 538 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TEKT4Q8WW24 435 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ATP8A2Q9NTI2 1148 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SERPINB13Q9UIV8 391 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PCDHGA3Q9Y5H0 932 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SPAG17Q6Q759 2223 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SLCO1B7G3V0H7 640 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TEX46H3BTG2 121 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ERN1O75460 977 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ITGA10O75578 1167 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 POLR2EP19388 210 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 MX2P20592 715 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SRSF11Q05519 484 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PAK1Q13153 545 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SLC30A9Q6PML9 568 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SRLQ86TD4 932 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 FBXO11Q86XK2 927 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 FLCNQ8NFG4 579 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ANKRD36BP1Q96IX9 119 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ARMC7Q9H6L4 198 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 CAAP1Q9H8G2 361 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 EML4Q9HC35 981 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ERAP1Q9NZ08 941 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 SEPT9Q9UHD8 586 aaPredicted RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 DDX25Q9UHL0 483 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 APPL1Q9UKG1 709 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 C15orf38-AP3S2A0A0A6YYH1 394 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PSMD11O00231 422 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 WWP2O00308 870 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 HMGCRP04035 888 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 HNRNPH1P31943 449 aaKnown RBP3.46□□□□□ -1.86
CSMD3-202ENST00000339701 IFNAR2P48551 515 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PFKPQ01813 784 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 PTK2Q05397 1052 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 TFDP2Q14188 446 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 KLHL12Q53G59 568 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ARPINQ7Z6K5 226 aa3.46□□□□□ -1.86
CSMD3-202ENST00000339701 ANKRD23Q86SG2 305 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms