RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 CACNB3P54284 484 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 DRG2P55039 364 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 HNRNPDQ14103 355 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 GRB14Q14449 540 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 SLC18A3Q16572 532 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 CLPPQ16740 277 aaPredicted RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 HOOK3Q86VS8 718 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ZDHHC14Q8IZN3 488 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 CSGALNACT2Q8N6G5 542 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 FMO2Q99518 471 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ZMYND12Q9H0C1 365 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ASCC2Q9H1I8 757 aaPredicted RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 VCX3BQ9H321 246 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 VCX3AQ9NNX9 186 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 BTBD7Q9P203 1132 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 DBR1Q9UK59 544 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 SH3GLB1Q9Y371 365 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 KCNK3O14649 394 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 RIPK2O43353 540 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 KRT36O76013 467 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 OR6B1O95007 311 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 NAT1P18440 290 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 CCNE1P24864 410 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 POLGP54098 1239 aaPredicted RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 PTENP60484 403 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 Q3C1V9 767 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 CENPPQ6IPU0 288 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 RRAGAQ7L523 313 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF554Q86TJ5 538 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 WDR60Q8WVS4 1066 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 RSPH1Q8WYR4 309 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 P2RX5Q93086 422 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 SRPK1Q96SB4 655 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ARPC5LQ9BPX5 153 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 NOC4LQ9BVI4 516 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 UPF3AQ9H1J1 476 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 FAM207AQ9NSI2 230 aaPredicted RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 UBAP1Q9NZ09 502 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 TBC1D7Q9P0N9 293 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 KANSL3Q9P2N6 904 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 GRID1Q9ULK0 1009 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 MAGEB6P1A0A0J9YX57 407 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 TMEM247A6NEH6 219 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 CXCL11O14625 94 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 BUD23O43709 281 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 AKR1B10O60218 316 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 FGFR1P11362 822 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 VAV1P15498 845 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 NLRP5P59047 1200 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 PFKPQ01813 784 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 KPNB1Q14974 876 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF174Q15697 407 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 MUM1Q2TAK8 710 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF792Q3KQV3 632 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 C6orf118Q5T5N4 469 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 PRAMEF18Q5VWM3 479 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 SCUBE1Q8IWY4 988 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 FBXO25Q8TCJ0 367 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 WASF1Q92558 559 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 TEKT1Q969V4 418 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 PTCD3Q96EY7 689 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 GMCL1Q96IK5 515 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 DHRS1Q96LJ7 313 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ARHGAP39Q9C0H5 1083 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 NSRP1Q9H0G5 558 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 AAASQ9NRG9 546 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 DISC1Q9NRI5 854 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 METTL5Q9NRN9 209 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 TXLNGQ9NUQ3 528 aa5.96□□□□□ -1.46
CSDE1-202ENST00000339438 STX18Q9P2W9 335 aaKnown RBP5.96□□□□□ -1.46
CSDE1-202ENST00000339438 ABCB11O95342 1321 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 UMODL1Q5DID0 1318 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 TMEM120BA0PK00 339 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 CCDC169A6NNP5 214 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 PGRMC1O00264 195 aaKnown RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 CYTH3O43739 400 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 LDHBP07195 334 aaKnown RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 SMIM18P0DKX4 95 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 COL6A2P12110 1019 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 ALOX15P16050 662 aaPredicted RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 CRABP2P29373 138 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 DNA2P51530 1060 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 SLC34A1Q06495 639 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 TMED1Q13445 227 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 KBTBD12Q3ZCT8 623 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 USH1GQ495M9 461 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 RBM26Q5T8P6 1007 aaKnown RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 LRRC55Q6ZSA7 311 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 MARK2Q7KZI7 788 aaKnown RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 MAPKAPK5Q8IW41 473 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 RIBC1Q8N443 379 aaPredicted RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 NEK9Q8TD19 979 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 C10orf82Q8WW14 230 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 HIC2Q96JB3 615 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 DNAJC1Q96KC8 554 aaKnown RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 TRIM47Q96LD4 638 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 SMC6Q96SB8 1091 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 ZNF184Q99676 751 aaPredicted RBP5.95□□□□□ -1.46
CSDE1-202ENST00000339438 USP29Q9HBJ7 922 aa5.95□□□□□ -1.46
CSDE1-202ENST00000339438 AGTPBP1Q9UPW5 1226 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms