RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 PVALEFA0A1B0GWK0 134 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 TEX28O15482 410 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 SOD2P04179 222 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 SP100P23497 879 aaPredicted RBP13.1□□□□□ -0.31
SCFD1-201ENST00000311943 UBE3AQ05086 875 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 CAMK4Q16566 473 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 FAM43BQ6ZT52 329 aaPredicted RBP13.1□□□□□ -0.31
SCFD1-201ENST00000311943 RIN2Q8WYP3 895 aaPredicted RBP13.1□□□□□ -0.31
SCFD1-201ENST00000311943 KLHL5Q96PQ7 755 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 COLEC11Q9BWP8 271 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 CD320Q9NPF0 282 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 CHST7Q9NS84 486 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 EXOC1Q9NV70 894 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 LZTS1Q9Y250 596 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 PLXNA3P51805 1871 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 GRXCR2A6NFK2 248 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 BIN1O00499 593 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 BMP1P13497 986 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 BMP6P22004 513 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 FAM160A1Q05DH4 1040 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 OR5B17Q8NGF7 314 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 PABPC5Q96DU9 382 aaKnown RBP13.09□□□□□ -0.31
SCFD1-201ENST00000311943 ASB2Q96Q27 587 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 KCTD10Q9H3F6 313 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 MAGEF1Q9HAY2 307 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 HSPBP1Q9NZL4 362 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 KCNG1Q9UIX4 513 aa13.09□□□□□ -0.31
SCFD1-201ENST00000311943 NDUFV1P49821 464 aa13.08□□□□□ -0.31
SCFD1-201ENST00000311943 PMS1P54277 932 aaKnown RBP13.08□□□□□ -0.31
SCFD1-201ENST00000311943 PPP2R3AQ06190 1150 aa13.08□□□□□ -0.31
SCFD1-201ENST00000311943 SMC1AQ14683 1233 aaKnown RBP13.08□□□□□ -0.31
SCFD1-201ENST00000311943 COL19A1Q14993 1142 aa13.08□□□□□ -0.31
SCFD1-201ENST00000311943 CSPP1Q1MSJ5 1256 aa13.08□□□□□ -0.31
SCFD1-201ENST00000311943 SYCE2Q6PIF2 218 aa13.08□□□□□ -0.31
SCFD1-201ENST00000311943 ST13P5Q8NFI4 369 aaPredicted RBP13.08□□□□□ -0.31
SCFD1-201ENST00000311943 LNX1Q8TBB1 728 aaPredicted RBP13.08□□□□□ -0.31
SCFD1-201ENST00000311943 LRRC27Q9C0I9 530 aa13.08□□□□□ -0.31
SCFD1-201ENST00000311943 SCN1AP35498 2009 aa13.08□□□□□ -0.32
SCFD1-201ENST00000311943 HCRTO43612 131 aa13.08□□□□□ -0.32
SCFD1-201ENST00000311943 CD44P16070 742 aaKnown RBP13.08□□□□□ -0.32
SCFD1-201ENST00000311943 DLG4P78352 724 aa13.08□□□□□ -0.32
SCFD1-201ENST00000311943 KNOP1Q1ED39 458 aaKnown RBP13.08□□□□□ -0.32
SCFD1-201ENST00000311943 CCDC127Q96BQ5 260 aa13.08□□□□□ -0.32
SCFD1-201ENST00000311943 HVCN1Q96D96 273 aa13.08□□□□□ -0.32
SCFD1-201ENST00000311943 CLSTN3Q9BQT9 956 aa13.08□□□□□ -0.32
SCFD1-201ENST00000311943 COL25A1Q9BXS0 654 aaPredicted RBP13.08□□□□□ -0.32
SCFD1-201ENST00000311943 RBAKQ9NYW8 714 aaPredicted RBP13.08□□□□□ -0.32
SCFD1-201ENST00000311943 RFPL2O75678 378 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 RHOBTB3O94955 611 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 GLUD2P49448 558 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 TFAMQ00059 246 aaKnown RBP13.07□□□□□ -0.32
SCFD1-201ENST00000311943 CCDC142Q17RM4 750 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 SLFN12LQ6IEE8 588 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 KIAA1841Q6NSI8 718 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 EFHBQ8N7U6 833 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 KHSRPQ92945 711 aaKnown RBP eCLIP13.07□□□□□ -0.321e-7■■■□□ 15
SCFD1-201ENST00000311943 MSLNLQ96KJ4 702 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 TMEM209Q96SK2 561 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 HERC2P3Q9BVR0 1158 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 TMEM206Q9H813 350 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 NGRNQ9NPE2 291 aaKnown RBP13.07□□□□□ -0.32
SCFD1-201ENST00000311943 MRPL17Q9NRX2 175 aaKnown RBP13.07□□□□□ -0.32
SCFD1-201ENST00000311943 EXOC7Q9UPT5 735 aa13.07□□□□□ -0.32
SCFD1-201ENST00000311943 TRIM49BA6NDI0 452 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 EIF3DO15371 548 aaKnown RBP eCLIP13.06□□□□□ -0.32
SCFD1-201ENST00000311943 LRRN2O75325 713 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 OR4Q2P0C623 313 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 KLRC2P26717 231 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 DSG1Q02413 1049 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 SPATA1Q5VX52 437 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 DCLRE1AQ6PJP8 1040 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 GPD1LQ8N335 351 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 CXorf38Q8TB03 319 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 SLC22A17Q8WUG5 538 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 ZNF516Q92618 1163 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 DDX27Q96GQ7 796 aaKnown RBP13.06□□□□□ -0.32
SCFD1-201ENST00000311943 MTMR12Q9C0I1 747 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.06□□□□□ -0.323e-6■■■■■ 28.8
SCFD1-201ENST00000311943 DOCK6Q96HP0 2047 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 EXTL3O43909 919 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 URODP06132 367 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 GARTP22102 1010 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 MCM4P33991 863 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 PRCPP42785 496 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 CLCN4P51793 760 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 ARPP19P56211 112 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 TMEM132DQ14C87 1099 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 BMT2Q1RMZ1 405 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 C9orf57Q5W0N0 161 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 PTCRAQ6ISU1 281 aaPredicted RBP13.06□□□□□ -0.32
SCFD1-201ENST00000311943 TMC5Q6UXY8 1006 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 APBB1IPQ7Z5R6 666 aaPredicted RBP13.06□□□□□ -0.32
SCFD1-201ENST00000311943 BRSK2Q8IWQ3 736 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 C1orf127Q8N9H9 656 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 TMEM87AQ8NBN3 555 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 RSPH1Q8WYR4 309 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 PLEKHA5Q9HAU0 1116 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 USP25Q9UHP3 1055 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 SIX4Q9UIU6 781 aa13.06□□□□□ -0.32
SCFD1-201ENST00000311943 NUB1Q9Y5A7 615 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms