RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 KDSRQ06136 332 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 MTMR14Q8NCE2 650 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.64□□□□□ -1.031e-8■■■□□ 15.9
VPS41-202ENST00000310301 ABHD16BQ9H3Z7 469 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 XPNPEP3Q9NQH7 507 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 PKD2L2Q9NZM6 624 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 LGALS16A8MUM7 142 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 MEIS1O00470 390 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 WDR47O94967 919 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 CHN1P15882 459 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 PTPRAP18433 802 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 SCP2P22307 547 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 KRT17Q04695 432 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 LRRC63Q05C16 580 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 ZNF211Q13398 564 aaPredicted RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 FAM149B1Q96BN6 582 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 KCNF1Q9H3M0 494 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 VIPAS39Q9H9C1 493 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 ABCF3Q9NUQ8 709 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 CEP72Q9P209 647 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 TTC7AQ9ULT0 858 aaPredicted RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 FNDC3AQ9Y2H6 1198 aaKnown RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 MIF4GDA9UHW6 222 aaKnown RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 GGPS1O95749 300 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 MARK3P27448 753 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 DSG3P32926 999 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 SOX5P35711 763 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 ERVK-9P63128 1117 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 ERVK-24P63145 666 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 ZNF543Q08ER8 600 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 NFIAQ12857 509 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 KRT39Q6A163 491 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 NOP9Q86U38 636 aaKnown RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 SHCBP1Q8NEM2 672 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 ANKRD36BP1Q96IX9 119 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 LRRC1Q9BTT6 524 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 SEZ6LQ9BYH1 1024 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 UBN1Q9NPG3 1134 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 CHCHD3Q9NX63 227 aaKnown RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 SLC13A4Q9UKG4 626 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 GDAQ9Y2T3 454 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 DPYSL4O14531 572 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 MED7O43513 233 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 RFX5P48382 616 aaPredicted RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 DAB2IPQ5VWQ8 1189 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 PLD3Q8IV08 490 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 FAM20AQ96MK3 541 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 SLC13A1Q9BZW2 595 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 OLFML3Q9NRN5 406 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 PRR12Q9ULL5 1215 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 NR3C2P08235 984 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 IFNAR1P17181 557 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 IL10P22301 178 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 ATN1P54259 1190 aaPredicted RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 BTKQ06187 659 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 OR6B2Q6IFH4 312 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 TXNRD3Q86VQ6 643 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 FLCNQ8NFG4 579 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 TEKT4Q8WW24 435 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 WDR18Q9BV38 432 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 USP15Q9Y4E8 981 aaPredicted RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 TRIM49BA6NDI0 452 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 ANP32DO95626 131 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 FGFR4P22455 802 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 ATP6V1E1P36543 226 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 PRAMEP78395 509 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 CRYMQ14894 314 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 BBS5Q8N3I7 341 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 KIF2BQ8N4N8 673 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 TBCKQ8TEA7 893 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 DHX38Q92620 1227 aaKnown RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 VTA1Q9NP79 307 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 PSD3Q9NYI0 1048 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 SLC9A2Q9UBY0 812 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 FBXO2Q9UK22 296 aaPredicted RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 HPCAL4Q9UM19 191 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 AURKCQ9UQB9 309 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 NOC2LQ9Y3T9 749 aaKnown RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 SHPRHQ149N8 1683 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 DYTNA2CJ06 578 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 TYW5A2RUC4 315 aaKnown RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 PJA2O43164 708 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 FARP2O94887 1054 aaPredicted RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 YBX3P16989 372 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS41-202ENST00000310301 NCAPHQ15003 741 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 KYAT1Q16773 422 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 PPM1NQ8N819 430 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 MTG1Q9BT17 334 aaPredicted RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 PDGFDQ9GZP0 370 aaPredicted RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 ALG13Q9NP73 1137 aaKnown RBP8.63□□□□□ -1.03
VPS41-202ENST00000310301 ANAPC7Q9UJX3 599 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 CHMP2BQ9UQN3 213 aa8.63□□□□□ -1.03
VPS41-202ENST00000310301 TRAPPC3O43617 180 aa8.62□□□□□ -1.03
VPS41-202ENST00000310301 BLVRAP53004 296 aa8.62□□□□□ -1.03
VPS41-202ENST00000310301 ORC2Q13416 577 aaPredicted RBP8.62□□□□□ -1.03
VPS41-202ENST00000310301 FAM110CQ1W6H9 321 aa8.62□□□□□ -1.03
VPS41-202ENST00000310301 NAIF1Q69YI7 327 aaPredicted RBP8.62□□□□□ -1.03
VPS41-202ENST00000310301 ADGRF4Q8IZF3 695 aa8.62□□□□□ -1.03
VPS41-202ENST00000310301 SPDYE1Q8NFV5 336 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms