RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 DYNLL1P63167 89 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 ITIH4Q14624 930 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 NAA30Q147X3 362 aaPredicted RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 ZNF746Q6NUN9 644 aaPredicted RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 CYB5D1Q6P9G0 228 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 DCUN1D1Q96GG9 259 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 CLASP2O75122 1294 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 PTK7Q13308 1070 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 MTMR1Q13613 665 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 ZNF235Q14590 738 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 CLMNQ96JQ2 1002 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 PUS7LQ9H0K6 701 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 RNPEPQ9H4A4 650 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 HERC5Q9UII4 1024 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 TSR3Q9UJK0 312 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 ADAM30Q9UKF2 790 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 AP3M2P53677 418 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 FAM153AQ9UHL3 310 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 PTPRTO14522 1441 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 ATP9BO43861 1147 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 TRIM25Q14258 630 aaKnown RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 COBLL1Q53SF7 1204 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PPP1R18Q6NYC8 613 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 CCNI2Q6ZMN8 369 aaPredicted RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 CATSPER4Q7RTX7 472 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 AFG1LQ8WV93 481 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 MS4A14Q96JA4 679 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 ANKRD27Q96NW4 1050 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 TASP1Q9H6P5 420 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 DTNAQ9Y4J8 743 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 SMAPO00193 183 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 ARHGEF6Q15052 776 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PADI6Q6TGC4 694 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 FASTKD5Q7L8L6 764 aaKnown RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 GUF1Q8N442 669 aaKnown RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 DCAF4Q8WV16 495 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 KRT35Q92764 455 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 AIFM3Q96NN9 605 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PLEKHG1Q9ULL1 1385 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 EVPLLA8MZ36 301 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 HIST1H2AGP0C0S8 130 aaPredicted RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 HIST1H2ADP20671 130 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 RASGRP2Q7LDG7 609 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PID1Q7Z2X4 250 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 TMC4Q7Z404 712 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 IFNEQ86WN2 208 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 C19orf18Q8NEA5 215 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PTPRN2Q92932 1015 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 HIST1H2AHQ96KK5 128 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 HIST1H2AJQ99878 128 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 H2AFJQ9BTM1 129 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 RAD21L1Q9H4I0 556 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PCMTD2Q9NV79 361 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 DNALI1O14645 258 aaPredicted RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 IRAK1P51617 712 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 NDUFA5Q16718 116 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 ANKRD40Q6AI12 368 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 DPY19L2Q6NUT2 758 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 C3orf70A6NLC5 250 aaPredicted RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 ZNF185O15231 689 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PFKFB3Q16875 520 aaPredicted RBP14.54□□□□□ -0.08
CSPG4-201ENST00000308508 THNSL1Q8IYQ7 743 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 MBD2Q9UBB5 411 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 UBXN8O00124 270 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 PSMC6P62333 389 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 KBTBD12Q3ZCT8 623 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 ANKRD7Q92527 254 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 WNK4Q96J92 1243 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 FAM20AQ96MK3 541 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 AGPAT1Q99943 283 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 ARHGEF38Q9NXL2 777 aa14.54□□□□□ -0.08
CSPG4-201ENST00000308508 MYO3BQ8WXR4 1341 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 TRPC5OSA6NMA1 111 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 H2AFYO75367 372 aaKnown RBP14.53□□□□□ -0.08
CSPG4-201ENST00000308508 GNAT1P11488 350 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 CC2D2BQ6DHV5 1058 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 VPS37AQ8NEZ2 397 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 C2orf40Q9H1Z8 148 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 LIMA1Q9UHB6 759 aaKnown RBP14.53□□□□□ -0.08
CSPG4-201ENST00000308508 GRID1Q9ULK0 1009 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 RAD51Q06609 339 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 SCN4BQ8IWT1 228 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 FLAD1Q8NFF5 587 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 DEPDC7Q96QD5 511 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 PPP1R16BQ96T49 567 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 CAPZA2P47755 286 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 RCAN1P53805 252 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 DCAF4L1Q3SXM0 396 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 HES6Q96HZ4 224 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 OLFM1Q99784 485 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 KRCC1Q9NPI7 259 aaPredicted RBP14.53□□□□□ -0.08
CSPG4-201ENST00000308508 CLCA2Q9UQC9 943 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 POTEMA6NI47 508 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 NCF4Q15080 339 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 SLC18A3Q16572 532 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 RIC8BQ9NVN3 520 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 ITGB1BP2Q9UKP3 347 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 GDF11O95390 407 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 NCALDP61601 193 aa14.53□□□□□ -0.08
CSPG4-201ENST00000308508 HPCAP84074 193 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms