RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 OLFML2BQ68BL8 750 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 LVRNQ6Q4G3 990 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 TRABD2AQ86V40 505 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 NCAPG2Q86XI2 1143 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 ARHGEF19Q8IW93 802 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 ANKRD35Q8N283 1001 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 RIBC1Q8N443 379 aaPredicted RBP14.32□□□□□ -0.12
SKA3-201ENST00000298260 GLIS1Q8NBF1 620 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 FAM163AQ96GL9 167 aaPredicted RBP14.32□□□□□ -0.12
SKA3-201ENST00000298260 SNF8Q96H20 258 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 GPR101Q96P66 508 aaPredicted RBP14.32□□□□□ -0.12
SKA3-201ENST00000298260 CDCA7Q9BWT1 371 aaPredicted RBP14.32□□□□□ -0.12
SKA3-201ENST00000298260 ZWILCHQ9H900 591 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 TAS2R1Q9NYW7 299 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 CLIC5Q9NZA1 410 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 TISP43B9A030 160 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 CALUO43852 315 aaPredicted RBP14.32□□□□□ -0.12
SKA3-201ENST00000298260 SGPL1O95470 568 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 DLG4P78352 724 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 LRRC6Q86X45 466 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 PPFIBP2Q8ND30 876 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 DENND1AQ8TEH3 1009 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 ZNF75CPQ92670 426 aaPredicted RBP14.32□□□□□ -0.12
SKA3-201ENST00000298260 BTBD10Q9BSF8 475 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 NUP85Q9BW27 656 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 PHF24Q9UPV7 400 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 ATAD5Q96QE3 1844 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 ATF2P15336 505 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 GJC1P36383 396 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 CETN2P41208 172 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 GRIA2P42262 883 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 SPARCL1Q14515 664 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 FOXR2Q6PJQ5 311 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 TAB3Q8N5C8 712 aaPredicted RBP14.31□□□□□ -0.12
SKA3-201ENST00000298260 FAM161BQ96MY7 647 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 SRP68Q9UHB9 627 aaKnown RBP14.31□□□□□ -0.12
SKA3-201ENST00000298260 MROH7Q68CQ1 1323 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 RREB1Q92766 1687 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 MIF4GDA9UHW6 222 aaKnown RBP14.31□□□□□ -0.12
SKA3-201ENST00000298260 ZSCAN5DPP0CG00 497 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 CDK8P49336 464 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 GPC5P78333 572 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 AP1B1Q10567 949 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 CYP1B1Q16678 543 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 ERFEQ4G0M1 354 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 EPC2Q52LR7 807 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 PPP4R3CPQ6ZMV5 832 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 PHF12Q96QT6 1004 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 MAK16Q9BXY0 300 aaKnown RBP14.31□□□□□ -0.12
SKA3-201ENST00000298260 CHMP2BQ9UQN3 213 aa14.31□□□□□ -0.12
SKA3-201ENST00000298260 MYH14Q7Z406 1995 aaKnown RBP14.31□□□□□ -0.12
SKA3-201ENST00000298260 ANKRD36CQ5JPF3 1778 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 PDXKO00764 312 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 NTSR2O95665 410 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 EFTUD2Q15029 972 aaKnown RBP eCLIP14.3□□□□□ -0.121e-8■■■■■ 36.9
SKA3-201ENST00000298260 PDK4Q16654 411 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 TBC1D10BQ4KMP7 808 aaPredicted RBP14.3□□□□□ -0.12
SKA3-201ENST00000298260 LIN52Q52LA3 116 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 CD101Q93033 1021 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 PLEKHG4BQ96PX9 1271 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 RBM15Q96T37 977 aaKnown RBP eCLIP14.3□□□□□ -0.12
SKA3-201ENST00000298260 TLE6Q9H808 572 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 SAYSD1Q9NPB0 183 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 TYW1Q9NV66 732 aaKnown RBP14.3□□□□□ -0.12
SKA3-201ENST00000298260 WHRNQ9P202 907 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 TRAFD1O14545 582 aaPredicted RBP14.3□□□□□ -0.12
SKA3-201ENST00000298260 ZBTB16Q05516 673 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 SATL1Q86VE3 508 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 RHOT2Q8IXI1 618 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 ZNF564Q8TBZ8 553 aaPredicted RBP14.3□□□□□ -0.12
SKA3-201ENST00000298260 SNRNP27Q8WVK2 155 aaKnown RBP14.3□□□□□ -0.12
SKA3-201ENST00000298260 ASCC2Q9H1I8 757 aaPredicted RBP14.3□□□□□ -0.12
SKA3-201ENST00000298260 EBF3Q9H4W6 596 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 EURLQ9NYK6 297 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 ATXN10Q9UBB4 475 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 APEX2Q9UBZ4 518 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 LGALS13Q9UHV8 139 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.3□□□□□ -0.12
SKA3-201ENST00000298260 KIAA1551Q9HCM1 1747 aa14.3□□□□□ -0.12
SKA3-201ENST00000298260 GOLGA8SH3BPF8 625 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 GOLGA8MH3BSY2 632 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 CCDC22O60826 627 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 OPHN1O60890 802 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 HAUS5O94927 633 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 FAM200BP0CF97 657 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 ETS1P14921 441 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 ITIH2P19823 946 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 HIBADHP31937 336 aaKnown RBP14.29□□□□□ -0.12
SKA3-201ENST00000298260 SNAP25P60880 206 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 NR1H3Q13133 447 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 C11orf63Q6NUN7 778 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 ZSWIM2Q8NEG5 633 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 PCIF1Q9H4Z3 704 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 LRRC19Q9H756 370 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.29□□□□□ -0.12
SKA3-201ENST00000298260 PFDN1O60925 122 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 PGM3O95394 542 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 LMNAP02545 664 aaKnown RBP14.29□□□□□ -0.12
SKA3-201ENST00000298260 HSPA6P17066 643 aa14.29□□□□□ -0.12
SKA3-201ENST00000298260 MAGEA4P43358 317 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms