RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FTLP02792 175 aaPredicted RBP17.73■□□□□ 0.43
USP4-201ENST00000265560 RAP1GAPP47736 663 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 CDR1P51861 262 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 SLC10A6Q3KNW5 377 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 ZNF784Q8NCA9 323 aaPredicted RBP17.73■□□□□ 0.43
USP4-201ENST00000265560 COG1Q8WTW3 980 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 KCNN1Q92952 543 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 OSBPL7Q9BZF2 842 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 POLIQ9UNA4 740 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 PCDHB4Q9Y5E5 795 aa17.73■□□□□ 0.43
USP4-201ENST00000265560 C17orf102A2RUQ5 167 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 RARBP10826 455 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 AKAP5P24588 427 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 TRPC3Q13507 836 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 XPNPEP3Q9NQH7 507 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 SNTG2Q9NY99 539 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 KLK14Q9P0G3 267 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 NOCTQ9UK39 431 aaKnown RBP17.72■□□□□ 0.43
USP4-201ENST00000265560 HAS3O00219 553 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 AMPD2Q01433 879 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 LLGL2Q6P1M3 1020 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 NFKBIZQ9BYH8 718 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 CDH8P55286 799 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 MRPS25P82663 173 aaKnown RBP17.72■□□□□ 0.43
USP4-201ENST00000265560 CUL2Q13617 745 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 WDR49Q8IV35 697 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 TRIM58Q8NG06 486 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 GCOM2Q9BZD3 368 aaPredicted RBP17.72■□□□□ 0.43
USP4-201ENST00000265560 LUC7LQ9NQ29 371 aaKnown RBP17.72■□□□□ 0.43
USP4-201ENST00000265560 SAR1BQ9Y6B6 198 aa17.72■□□□□ 0.43
USP4-201ENST00000265560 ANK1P16157 1881 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 A0A1B0GUA9 196 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 MBLAC1A4D2B0 266 aaPredicted RBP17.71■□□□□ 0.43
USP4-201ENST00000265560 DYNC1I1O14576 645 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 ITGB3P05106 788 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 SCP2P22307 547 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 ADAM17P78536 824 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 FMO1Q01740 532 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 GDF6Q6KF10 455 aaPredicted RBP17.71■□□□□ 0.43
USP4-201ENST00000265560 ZNF662Q6ZS27 426 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 PIN4Q9Y237 131 aaKnown RBP17.71■□□□□ 0.43
USP4-201ENST00000265560 CITO14578 2027 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 GRID2IPA4D2P6 1211 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 ASGR1P07306 291 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 CCDC172P0C7W6 258 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 RFX1P22670 979 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 EIF4BP23588 611 aaKnown RBP17.71■□□□□ 0.43
USP4-201ENST00000265560 APLP1P51693 650 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 MCCD1P59942 119 aaPredicted RBP17.71■□□□□ 0.43
USP4-201ENST00000265560 KCNA10Q16322 511 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 CPA5Q8WXQ8 436 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 ERO1AQ96HE7 468 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 MS4A14Q96JA4 679 aa17.71■□□□□ 0.43
USP4-201ENST00000265560 NXF3Q9H4D5 531 aaKnown RBP17.71■□□□□ 0.43
USP4-201ENST00000265560 SEPT4O43236 478 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 PDE6CP51160 858 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 SLC35G2Q8TBE7 412 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 ZBTB9Q96C00 473 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 MMS19Q96T76 1030 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 RNF39Q9H2S5 420 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 SMIM35A0A1B0GVV1 85 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 PDE2AO00408 941 aaPredicted RBP17.7■□□□□ 0.42
USP4-201ENST00000265560 CLTAP09496 248 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 GCNT1Q02742 428 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 SNX17Q15036 470 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 WDR72Q3MJ13 1102 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 C1orf127Q8N9H9 656 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 ALS2CR12Q96Q35 445 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 IMPG2Q9BZV3 1241 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 SIX4Q9UIU6 781 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 NENFQ9UMX5 172 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 DARSP14868 501 aaKnown RBP17.7■□□□□ 0.42
USP4-201ENST00000265560 NFX1Q12986 1120 aaKnown RBP17.7■□□□□ 0.42
USP4-201ENST00000265560 FAM187BQ17R55 369 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 BTBD6Q96KE9 485 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 ADPGKQ9BRR6 497 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 TLR10Q9BXR5 811 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 PDCL3Q9H2J4 239 aa17.7■□□□□ 0.42
USP4-201ENST00000265560 TMEM110-MUSTN1A8MSY1 372 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 TNNC2P02585 160 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 ACO1P21399 889 aaKnown RBP17.69■□□□□ 0.42
USP4-201ENST00000265560 GJA9P57773 515 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 POU5F1BQ06416 359 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 ZNF699Q32M78 642 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 UBXN4Q92575 508 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 ANKRD36BP1Q96IX9 119 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 ACAP3Q96P50 834 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 TRIM6Q9C030 488 aaPredicted RBP17.69■□□□□ 0.42
USP4-201ENST00000265560 COG5Q9UP83 839 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 TADA3O75528 432 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 ASS1P00966 412 aaKnown RBP17.69■□□□□ 0.42
USP4-201ENST00000265560 MCF2P10911 925 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 SRGAP1Q7Z6B7 1085 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 ZNF410Q86VK4 478 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 IFNLR1Q8IU57 520 aaPredicted RBP17.69■□□□□ 0.42
USP4-201ENST00000265560 NOA1Q8NC60 698 aaKnown RBP17.69■□□□□ 0.42
USP4-201ENST00000265560 RAET1EQ8TD07 263 aa17.69■□□□□ 0.42
USP4-201ENST00000265560 CTNNBL1Q8WYA6 563 aaPredicted RBP17.69■□□□□ 0.42
USP4-201ENST00000265560 DDX1Q92499 740 aaKnown RBP17.69■□□□□ 0.42
USP4-201ENST00000265560 JRKLQ9Y4A0 524 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms