RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF34Q8IZ26 560 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 CALML6Q8TD86 181 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 C18orf8Q96DM3 657 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 STOML1Q9UBI4 398 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 A0A0G2JLW4 131 aa20.14■□□□□ 0.82
UPF1-201ENST00000262803 MAP4P27816 1152 aaKnown RBP20.14■□□□□ 0.82
UPF1-201ENST00000262803 CDH6P55285 790 aa20.14■□□□□ 0.82
UPF1-201ENST00000262803 NME3Q13232 169 aa20.14■□□□□ 0.82
UPF1-201ENST00000262803 EFL1Q7Z2Z2 1120 aaKnown RBP20.14■□□□□ 0.82
UPF1-201ENST00000262803 PRMT7Q9NVM4 692 aaPredicted RBP20.14■□□□□ 0.82
UPF1-201ENST00000262803 KIF17Q9P2E2 1029 aa20.14■□□□□ 0.82
UPF1-201ENST00000262803 RALBP11234 206 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 ENGASEQ8NFI3 743 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 TBC1D16Q8TBP0 767 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 RMDN1Q96DB5 314 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 TADA2AO75478 443 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 ACTR2P61160 394 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 KRT17Q04695 432 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 MTFR1Q15390 333 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 SZRD1Q7Z422 152 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 ZNF677Q86XU0 584 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 MICALL2Q8IY33 904 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 SELENONQ9NZV5 590 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 FLT1P17948 1338 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 PPP1R37O75864 691 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 GYPCP04921 128 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 SULT1E1P49888 294 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 PIGHQ14442 188 aaPredicted RBP20.14■□□□□ 0.81
UPF1-201ENST00000262803 RRM2BQ7LG56 351 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 RIT2Q99578 217 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 DAGLAQ9Y4D2 1042 aa20.14■□□□□ 0.81
UPF1-201ENST00000262803 UCHL3P15374 230 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 GALCP54803 685 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 HMGCS2P54868 508 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 SYTL3Q4VX76 610 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 CYFIP1Q7L576 1253 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 MFN1Q8IWA4 741 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 ATL2Q8NHH9 583 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 ING2Q9H160 280 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 ETNK1Q9HBU6 452 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 HDAC4P56524 1084 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 MAPRE1Q15691 268 aaKnown RBP20.13■□□□□ 0.81
UPF1-201ENST00000262803 ANKRD7Q92527 254 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 STK33Q9BYT3 514 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 COG4Q9H9E3 785 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 CDV3Q9UKY7 258 aaKnown RBP20.13■□□□□ 0.81
UPF1-201ENST00000262803 FGFR4P22455 802 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 RBBP7Q16576 425 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 CCNI2Q6ZMN8 369 aaPredicted RBP20.13■□□□□ 0.81
UPF1-201ENST00000262803 NUDCD3Q8IVD9 361 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 CATSPERBQ9H7T0 1116 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 PTPRUQ92729 1446 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 SYCE1LA8MT33 242 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 HNRNPRO43390 633 aaKnown RBP20.13■□□□□ 0.81
UPF1-201ENST00000262803 KITP10721 976 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 CPT1AP50416 773 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 ARFIP2P53365 341 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 ZBTB41Q5SVQ8 909 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 TRAPPC11Q7Z392 1133 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 ZC3H18Q86VM9 953 aaKnown RBP20.13■□□□□ 0.81
UPF1-201ENST00000262803 OR6P1Q8NGX9 317 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 SCFD2Q8WU76 684 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 E9PCH4 1651 aa20.13■□□□□ 0.81
UPF1-201ENST00000262803 CFAP99D6REC4 459 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 PFDN1O60925 122 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 THEMIS2Q5TEJ8 643 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 CCNYL1Q8N7R7 359 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 ZNF668Q96K58 619 aaPredicted RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 REEP2Q9BRK0 252 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 WWP1Q9H0M0 922 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 ZBTB7AO95365 584 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 TYK2P29597 1187 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 FRMD8Q9BZ67 464 aaPredicted RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 APEX2Q9UBZ4 518 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 MYO3AQ8NEV4 1616 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 MOCS2O96007 188 aaPredicted RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 MTMR2Q13614 643 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 KRT72Q14CN4 511 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 EDRF1Q3B7T1 1238 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 SDE2Q6IQ49 451 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 SH2D3CQ8N5H7 860 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 SMG5Q9UPR3 1016 aaKnown RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 CSPG5O95196 566 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 POU5F1BQ06416 359 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 ARHGAP15Q53QZ3 475 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 GLB1LQ6UWU2 654 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 PID1Q7Z2X4 250 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 MARCH10Q8NA82 808 aaPredicted RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 USP13Q92995 863 aaPredicted RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 MKNK1Q9BUB5 465 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 CASS4Q9NQ75 786 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 HPS5Q9UPZ3 1129 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 HBP1O60381 514 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 ITGA4P13612 1032 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 AP2B1P63010 937 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 DCAF4L1Q3SXM0 396 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 LMBRD2Q68DH5 695 aaPredicted RBP20.12■□□□□ 0.81
UPF1-201ENST00000262803 CLEC10AQ8IUN9 316 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 ELP3Q9H9T3 547 aa20.12■□□□□ 0.81
UPF1-201ENST00000262803 SARS2Q9NP81 518 aaKnown RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms