RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CCND2P30279 289 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 KYNUQ16719 465 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 C2CD6Q53TS8 623 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 LIN9Q5TKA1 542 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 ZNF365Q70YC5 407 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 PLCD3Q8N3E9 789 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 SENP7Q9BQF6 1050 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 HEMGNQ9BXL5 484 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.93■□□□□ 0.78
CPSF3-201ENST00000238112 ZNFX1Q9P2E3 1918 aaKnown RBP19.93■□□□□ 0.78
CPSF3-201ENST00000238112 ZNF862O60290 1169 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 SNX3O60493 162 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 SORBS3O60504 671 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 PROSCO94903 275 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 RALAP11233 206 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 TNNI1P19237 187 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 LMBRD2Q68DH5 695 aaPredicted RBP19.93■□□□□ 0.78
CPSF3-201ENST00000238112 XRRA1Q6P2D8 792 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 C15orf39Q6ZRI6 1047 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.93■□□□□ 0.78
CPSF3-201ENST00000238112 CTNNAL1Q9UBT7 734 aa19.93■□□□□ 0.78
CPSF3-201ENST00000238112 R3HDM2Q9Y2K5 976 aaKnown RBP19.93■□□□□ 0.78
CPSF3-201ENST00000238112 TCP11X1B4DZS4 312 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 EXTL3O43909 919 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 PIK3CAP42336 1068 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 LIG4P49917 911 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 PTP4A2Q12974 167 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 NBPF9Q3BBW0 867 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 LLGL2Q6P1M3 1020 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 VSTM1Q6UX27 236 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 RHOT1Q8IXI2 618 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 ANKRD42Q8N9B4 389 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 BBOF1Q8ND07 529 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 AGBL3Q8NEM8 1001 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.92■□□□□ 0.78
CPSF3-201ENST00000238112 ZNF516Q92618 1163 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 GPRASP2Q96D09 838 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 KIAA1586Q9HCI6 787 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 SEPT9Q9UHD8 586 aaPredicted RBP19.92■□□□□ 0.78
CPSF3-201ENST00000238112 SCAF8Q9UPN6 1271 aaKnown RBP19.92■□□□□ 0.78
CPSF3-201ENST00000238112 H0YCG3 227 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 PSTPIP1O43586 416 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 CYP1A1P04798 512 aaPredicted RBP19.92■□□□□ 0.78
CPSF3-201ENST00000238112 POTEJP0CG39 1038 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 RTP1P59025 263 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 FAM133BQ5BKY9 247 aaKnown RBP19.92■□□□□ 0.78
CPSF3-201ENST00000238112 DAB2IPQ5VWQ8 1189 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 SWSAP1Q6NVH7 229 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 MON1BQ7L1V2 547 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 CCDC89Q8N998 374 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 CCDC63Q8NA47 563 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 ATP6V0A4Q9HBG4 840 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 FGFR1OP2Q9NVK5 253 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 NINJ2Q9NZG7 142 aa19.92■□□□□ 0.78
CPSF3-201ENST00000238112 TPX2Q9ULW0 747 aaKnown RBP19.92■□□□□ 0.78
CPSF3-201ENST00000238112 USP15Q9Y4E8 981 aaPredicted RBP19.92■□□□□ 0.78
CPSF3-201ENST00000238112 WNT10BO00744 389 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 HLA-DRAP01903 254 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 PSAPP07602 524 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 CREB1P16220 341 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 BAATQ14032 418 aaPredicted RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 HIBCHQ6NVY1 386 aaPredicted RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 TTLL6Q8N841 843 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 C11orf70Q9BRQ4 267 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 RPAP3Q9H6T3 665 aaPredicted RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 MRPL47Q9HD33 250 aaKnown RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 TCEA3O75764 348 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 NR3C2P08235 984 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 BRAFP15056 766 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 ABCD1P33897 745 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 SSR1P43307 286 aaKnown RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 ELF3P78545 371 aaPredicted RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 SP4Q02446 784 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 KLF1Q13351 362 aaPredicted RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 PSMD6Q15008 389 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 CCNG2Q16589 344 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 ZACNQ401N2 412 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 VSIG10LQ86VR7 867 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 POLR3FQ9H1D9 316 aaPredicted RBP19.91■□□□□ 0.78
CPSF3-201ENST00000238112 RNF146Q9NTX7 359 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 ABCF3Q9NUQ8 709 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 ADAM22Q9P0K1 906 aa19.91■□□□□ 0.78
CPSF3-201ENST00000238112 MAFGO15525 162 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 MGRN1O60291 552 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 SUN1O94901 812 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 GJC1P36383 396 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 MTMR2Q13614 643 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 NUGGCQ68CJ6 796 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 TRIM72Q6ZMU5 477 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 TAS1R3Q7RTX0 852 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 CEP57Q86XR8 500 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 PASD1Q8IV76 773 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 NCAPGQ9BPX3 1015 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 CCDC77Q9BR77 488 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 MLXIPLQ9NP71 852 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 XPNPEP1Q9NQW7 623 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 ARHGAP28Q9P2N2 729 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 UMODL1Q5DID0 1318 aa19.9■□□□□ 0.78
CPSF3-201ENST00000238112 OAS1P00973 400 aaKnown RBP19.9■□□□□ 0.78
CPSF3-201ENST00000238112 MAP2K2P36507 400 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms