RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 MAN2A1Q16706 1144 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 DUOXA2Q1HG44 320 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 NOMO2Q5JPE7 1267 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 CLLU1OSQ5K130 101 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 C1orf220Q5T0J3 134 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 TCERG1LQ5VWI1 586 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 JADE1Q6IE81 842 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 URGCPQ8TCY9 931 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 HELQQ8TDG4 1101 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 ZNF516Q92618 1163 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 SLC35C1Q96A29 364 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 ZNF689Q96CS4 500 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-213ENST00000642137 KIF12Q96FN5 646 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 ZMAT2Q96NC0 199 aaKnown RBP13.34□□□□□ -0.27
LINC00339-213ENST00000642137 SLC9A7Q96T83 725 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 POP1Q99575 1024 aaKnown RBP13.34□□□□□ -0.27
LINC00339-213ENST00000642137 CXCL16Q9H2A7 254 aa13.34□□□□□ -0.27
LINC00339-213ENST00000642137 CXXC1Q9P0U4 656 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-213ENST00000642137 UBQLN1Q9UMX0 589 aaKnown RBP13.34□□□□□ -0.27
LINC00339-213ENST00000642137 PDCD11Q14690 1871 aaKnown RBP13.33□□□□□ -0.27
LINC00339-213ENST00000642137 FNDC1Q4ZHG4 1894 aaPredicted RBP13.33□□□□□ -0.27
LINC00339-213ENST00000642137 PTGESO14684 152 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 C4BPAP04003 597 aaKnown RBP13.33□□□□□ -0.28
LINC00339-213ENST00000642137 TPM2P07951 284 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 FGFR1P11362 822 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 ATP1A3P13637 1013 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 MLH1P40692 756 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 COPB1P53618 953 aaKnown RBP13.33□□□□□ -0.28
LINC00339-213ENST00000642137 TMEM132DQ14C87 1099 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 KRT31Q15323 416 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 SHHQ15465 462 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 VWA3BQ502W6 1294 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 APTXQ7Z2E3 356 aaKnown RBP13.33□□□□□ -0.28
LINC00339-213ENST00000642137 EFCAB13Q8IY85 973 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 ABI1Q8IZP0 508 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 ANKRD36BP1Q96IX9 119 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 ZFP42Q96MM3 310 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 PPP1R10Q96QC0 940 aaKnown RBP13.33□□□□□ -0.28
LINC00339-213ENST00000642137 UBE2OQ9C0C9 1292 aaKnown RBP13.33□□□□□ -0.28
LINC00339-213ENST00000642137 NDST4Q9H3R1 872 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 SLC38A7Q9NVC3 462 aa13.33□□□□□ -0.28
LINC00339-213ENST00000642137 TDRD15B5MCY1 1934 aaKnown RBP13.33□□□□□ -0.28
LINC00339-213ENST00000642137 TULP1O00294 542 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 P4HA2O15460 535 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 N4BP1O75113 896 aaKnown RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 GJB5O95377 273 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 POMCP01189 267 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 TNNC2P02585 160 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 AFPP02771 609 aaKnown RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 NFICP08651 508 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 TRIM49P0CI25 452 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 TRIM49CP0CI26 452 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 SCNN1GP51170 649 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 AFF1P51825 1210 aaKnown RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 HTRA4P83105 476 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 TFAMQ00059 246 aaKnown RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 FANCCQ00597 558 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 PPP3CAQ08209 521 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 GRIK3Q13003 919 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 NAB2Q15742 525 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 FILIP1LQ4L180 1135 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 DCAF17Q5H9S7 520 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 MIIPQ5JXC2 388 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 C9orf50Q5SZB4 431 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 KRT39Q6A163 491 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 C15orf39Q6ZRI6 1047 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 BEST2Q8NFU1 509 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 OR5B17Q8NGF7 314 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 MRPL9Q9BYD2 267 aaKnown RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 VPS16Q9H269 839 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 RC3H2Q9HBD1 1191 aaKnown RBP13.32□□□□□ -0.28
LINC00339-213ENST00000642137 TMEM8AQ9HCN3 771 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 INPP5FQ9Y2H2 1132 aa13.32□□□□□ -0.28
LINC00339-213ENST00000642137 PTPRSQ13332 1948 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 TBKBP1A7MCY6 615 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 SERPINC1P01008 464 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 TMEM191BP0C7N4 346 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 ATP2A2P16615 1042 aaKnown RBP13.31□□□□□ -0.28
LINC00339-213ENST00000642137 LRPAP1P30533 357 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 RPL9P32969 192 aaKnown RBP13.31□□□□□ -0.28
LINC00339-213ENST00000642137 GCLMP48507 274 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 FMO5P49326 533 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 TUSC3Q13454 348 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 ZACNQ401N2 412 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 GLRA4Q5JXX5 417 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 LMBRD2Q68DH5 695 aaPredicted RBP13.31□□□□□ -0.28
LINC00339-213ENST00000642137 SV2AQ7L0J3 742 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 TRAPPC11Q7Z392 1133 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 HERC6Q8IVU3 1022 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 CMTR2Q8IYT2 770 aaKnown RBP13.31□□□□□ -0.28
LINC00339-213ENST00000642137 RNPC3Q96LT9 517 aaKnown RBP13.31□□□□□ -0.28
LINC00339-213ENST00000642137 FAM193BQ96PV7 902 aaPredicted RBP13.31□□□□□ -0.28
LINC00339-213ENST00000642137 RAD9AQ99638 391 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 TBC1D13Q9NVG8 400 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 DPP3Q9NY33 737 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 TAB2Q9NYJ8 693 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 PLAGL2Q9UPG8 496 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 COQ4Q9Y3A0 265 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 INSL6Q9Y581 213 aa13.31□□□□□ -0.28
LINC00339-213ENST00000642137 PTPRJQ12913 1337 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms