RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ZNF131P52739 623 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ATP11AP98196 1134 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 NOMO2Q5JPE7 1267 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ARHGEF18Q6ZSZ5 1173 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 NELFBQ8WX92 580 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 PPP1R13BQ96KQ4 1090 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SLC39A2Q9NP94 309 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 E9PMD0 336 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 RTN3O95197 1032 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 PDGFRBP09619 1106 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ACRP10323 421 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 GUCY2CP25092 1073 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 RAPH1Q70E73 1250 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 LMNTD2Q8IXW0 634 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ASAP3Q8TDY4 903 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 HDAC11Q96DB2 347 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 PPP1R16AQ96I34 528 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 MCCC1Q96RQ3 725 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 GTPBP2Q9BX10 602 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 LSM14BQ9BX40 385 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 PLCB1Q9NQ66 1216 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 CDY2AQ9Y6F7 541 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 BTBD18B2RXH4 712 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ASGR1P07306 291 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 IL1R1P14778 569 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 POLR2EP19388 210 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SDC4P31431 198 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ALDH5A1P51649 535 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 EVCP57679 992 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 GRM4Q14833 912 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 EMC2Q15006 297 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 KYNUQ16719 465 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 RARS2Q5T160 578 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 MAATS1Q7Z4T9 603 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 C1QTNF3-AMACRE9PGA6 284 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 F5H5T6 163 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 URI1O94763 535 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 VTNP04004 478 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ITGAXP20702 1163 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PSMA3P25788 255 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 RANBP1P43487 201 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ACADSBP45954 432 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 DHPSP49366 369 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 BCAR1P56945 870 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 TSNAXIP1Q2TAA8 658 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF284Q2VY69 593 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 OVOS1Q6IE37 1185 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PPP4R3CPQ6ZMV5 832 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 RD3Q7Z3Z2 195 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CTAGE3PQ8IX95 158 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 TMCO5AQ8N6Q1 288 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 MAGEB10Q96LZ2 347 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 GAD1Q99259 594 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 RIT2Q99578 217 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.31□□□□□ -1.563e-8■□□□□ 9.3
SCN1A-218ENST00000640036 COG4Q9H9E3 785 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 NDFIP2Q9NV92 336 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PPME1Q9Y570 386 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 AK5Q9Y6K8 562 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 POLR1AO95602 1720 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 BUB1BO60566 1050 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 DNTTP04053 509 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 AMD1P17707 334 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 MRPS6P82932 125 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 USP39Q53GS9 565 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 FAM46CQ5VWP2 391 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ERAP2Q6P179 960 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 TEKT4Q8WW24 435 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC138Q96M89 665 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 NECTIN4Q96NY8 510 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 TM6SF1Q9BZW5 370 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ZFP14Q9HCL3 533 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SAGE1Q9NXZ1 904 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 KLHL8Q9P2G9 620 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SFI1A8K8P3 1242 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ERN1O75460 977 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SERPIND1P05546 499 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 INSRRP14616 1297 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CDC25CP30307 473 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 GNL1P36915 607 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 HALP42357 657 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 RPIAP49247 311 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 LMNB2Q03252 620 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SRSF11Q05519 484 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 NFIAQ12857 509 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PUS10Q3MIT2 529 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 HSP90AA5PQ58FG0 334 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 PRPF39Q86UA1 669 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SAPCD2Q86UD0 394 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 ZSCAN18Q8TBC5 510 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SPATA17Q96L03 361 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 TAAR1Q96RJ0 339 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 EIF2AK1Q9BQI3 630 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 WDR18Q9BV38 432 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 SRRTQ9BXP5 876 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 DDX56Q9NY93 547 aaKnown RBP5.31□□□□□ -1.56
SCN1A-218ENST00000640036 CEP290O15078 2479 aa5.31□□□□□ -1.56
SCN1A-218ENST00000640036 LMTK2Q8IWU2 1503 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms