RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CT47A1Q5JQC4 288 aaPredicted RBP5.8□□□□□ -1.48
CD44-239ENST00000639002 ABHD17BQ5VST6 288 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 GPR149Q86SP6 731 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 ZGPATQ8N5A5 531 aaKnown RBP5.8□□□□□ -1.48
CD44-239ENST00000639002 SUPT20HQ8NEM7 779 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.8□□□□□ -1.48
CD44-239ENST00000639002 FUBP1Q96AE4 644 aaKnown RBP5.8□□□□□ -1.48
CD44-239ENST00000639002 RIOX1Q9H6W3 641 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 A0A1B0GTW7 788 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 ZAR1LA6NP61 321 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 PPFIA2O75334 1257 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 POMCP01189 267 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 HLA-DOAP06340 250 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 HKR1P10072 659 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 ATP5JP18859 108 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 GCSHP23434 173 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 PLA2G5P39877 138 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 EGFLAMQ63HQ2 1017 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 FAM180AQ6UWF9 173 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 SEM1Q6ZVN7 128 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 SPATS2Q86XZ4 545 aaKnown RBP5.79□□□□□ -1.48
CD44-239ENST00000639002 DRC7Q8IY82 874 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 NACC2Q96BF6 587 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 FUBP3Q96I24 572 aaKnown RBP eCLIP5.79□□□□□ -1.48
CD44-239ENST00000639002 BBC3Q96PG8 261 aaPredicted RBP5.79□□□□□ -1.48
CD44-239ENST00000639002 ADI1Q9BV57 179 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 SENP6Q9GZR1 1112 aaPredicted RBP5.79□□□□□ -1.48
CD44-239ENST00000639002 ZNF277Q9NRM2 450 aaPredicted RBP5.79□□□□□ -1.48
CD44-239ENST00000639002 LANCL2Q9NS86 450 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 MOCS1Q9NZB8 636 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 AATKQ6ZMQ8 1374 aa5.79□□□□□ -1.48
CD44-239ENST00000639002 CDKL5O76039 1030 aa5.78□□□□□ -1.48
CD44-239ENST00000639002 ATP8B2P98198 1209 aa5.78□□□□□ -1.48
CD44-239ENST00000639002 MTM1Q13496 603 aa5.78□□□□□ -1.48
CD44-239ENST00000639002 GJC2Q5T442 439 aaPredicted RBP5.78□□□□□ -1.48
CD44-239ENST00000639002 RNF219Q5W0B1 726 aaPredicted RBP5.78□□□□□ -1.48
CD44-239ENST00000639002 CASKIN2Q8WXE0 1202 aa5.78□□□□□ -1.48
CD44-239ENST00000639002 DPF2Q92785 391 aa5.78□□□□□ -1.48
CD44-239ENST00000639002 TMEM74BQ9NUR3 256 aa5.78□□□□□ -1.48
CD44-239ENST00000639002 GPR45Q9Y5Y3 372 aa5.78□□□□□ -1.48
CD44-239ENST00000639002 ENDOD1O94919 500 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 ITGAMP11215 1152 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 CPEP16870 476 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 AGXTP21549 392 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 FBLP22087 321 aaKnown RBP5.77□□□□□ -1.49
CD44-239ENST00000639002 FGFR4P22455 802 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 CNGA1P29973 690 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 AVPR1BP47901 424 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 PTH2RP49190 550 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 SLC5A3P53794 718 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 INAVAQ3KP66 663 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 PRR16Q569H4 304 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 ZNF529Q6P280 563 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 UBE3BQ7Z3V4 1068 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 CAVIN3Q969G5 261 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 ALOXE3Q9BYJ1 711 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 USP25Q9UHP3 1055 aa5.77□□□□□ -1.49
CD44-239ENST00000639002 MAST3O60307 1309 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 ZFPL1O95159 310 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 ESRRBO95718 433 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 FOSP01100 380 aaPredicted RBP5.76□□□□□ -1.49
CD44-239ENST00000639002 CXADRP78310 365 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 ARMC6Q6NXE6 501 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 FAM98AQ8NCA5 519 aaKnown RBP5.76□□□□□ -1.49
CD44-239ENST00000639002 CCHCR1Q8TD31 782 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 ZNF764Q96H86 408 aaPredicted RBP5.76□□□□□ -1.49
CD44-239ENST00000639002 BOD1Q96IK1 185 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 R3HDMLQ9H3Y0 253 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 RNF181Q9P0P0 153 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 DNM3Q9UQ16 869 aa5.76□□□□□ -1.49
CD44-239ENST00000639002 TRIM75PA6NK02 468 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 NOMO3P69849 1222 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 HSD11B2P80365 405 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 KLF1Q13351 362 aaPredicted RBP5.75□□□□□ -1.49
CD44-239ENST00000639002 CYP2A13Q16696 494 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 NOMO2Q5JPE7 1267 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 ADGRG3Q86Y34 549 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 CBARPQ8N350 705 aaPredicted RBP5.75□□□□□ -1.49
CD44-239ENST00000639002 DCBLD1Q8N8Z6 715 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 SIMC1Q8NDZ2 872 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 NRG4Q8WWG1 115 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 CYFIP2Q96F07 1278 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 MARS2Q96GW9 593 aaKnown RBP5.75□□□□□ -1.49
CD44-239ENST00000639002 Q96MF0 132 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 RNPEPQ9H4A4 650 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 GSTO2Q9H4Y5 243 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 TMEM140Q9NV12 185 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 HSFX1Q9UBD0 423 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 ZBTB21Q9ULJ3 1066 aa5.75□□□□□ -1.49
CD44-239ENST00000639002 RUVBL1Q9Y265 456 aaKnown RBP5.75□□□□□ -1.49
CD44-239ENST00000639002 TCRBV7S2A1N4TA0A589 114 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 GPR32O75388 356 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 CKBP12277 381 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 DDCP20711 480 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 WASP42768 502 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 BLOC1S1P78537 153 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 DDX42Q86XP3 938 aaKnown RBP eCLIP5.74□□□□□ -1.49
CD44-239ENST00000639002 SLC44A3Q8N4M1 653 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 CNTD1Q8N815 330 aa5.74□□□□□ -1.49
CD44-239ENST00000639002 PPM1NQ8N819 430 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms