RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TYW1Q9NV66 732 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ARMC1Q9NVT9 282 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RWDD2AQ9UIY3 292 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 WDR17Q8IZU2 1322 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ZFYVE16Q7Z3T8 1539 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 LGALS16A8MUM7 142 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 PSMD11O00231 422 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 DGKIO75912 1065 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ITGAXP20702 1163 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 MAP4P27816 1152 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 HSPA1LP34931 641 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 LONP1P36776 959 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 IREB2P48200 963 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 IRF5Q13568 498 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TRAF7Q6Q0C0 670 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RFPL4BQ6ZWI9 263 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TMC4Q7Z404 712 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC84Q86UT8 332 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ITIH5Q86UX2 942 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 GIMAP1Q8WWP7 306 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TLCD1Q96CP7 247 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ZFYVE19Q96K21 471 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RHOBTB2Q9BYZ6 727 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SERHL2Q9H4I8 314 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC134Q9H6E4 229 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ARMC7Q9H6L4 198 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SP140LQ9H930 580 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 KCNMB3Q9NPA1 279 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 GNPTGQ9UJJ9 305 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 DBR1Q9UK59 544 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 VANGL2Q9ULK5 521 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CAPN6Q9Y6Q1 641 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 A0A0G2JND7 137 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 EVPLLA8MZ36 301 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 M0QX08 132 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ACSL4O60488 711 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 EXOC3O60645 756 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TBX10O75333 385 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ACADSBP45954 432 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ENTPD1P49961 510 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 PHC1P78364 1004 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 MAP3K10Q02779 954 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 POLA2Q14181 598 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 WDR72Q3MJ13 1102 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC14Q49A88 953 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 NADK2Q4G0N4 442 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RILPL1Q5EBL4 403 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 HABP4Q5JVS0 413 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RSBN1Q5VWQ0 802 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 EPM2AIP1Q7L775 607 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 VASH1Q7L8A9 365 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF572Q7Z3I7 529 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ALDH16A1Q8IZ83 802 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TBC1D16Q8TBP0 767 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 NEUROD6Q96NK8 337 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TRIM56Q9BRZ2 755 aaKnown RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 IL25Q9H293 177 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 HSD3B7Q9H2F3 369 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 RUBCNLQ9H714 662 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 HSFX1Q9UBD0 423 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 PACSIN2Q9UNF0 486 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 WNT7AO00755 349 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 EYA4O95677 639 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CYP1A2P05177 515 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 NEK3P51956 506 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ERVK-9P63128 1117 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ACVR2BQ13705 512 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF618Q5T7W0 954 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 PPP4R4Q6NUP7 873 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 SHC4Q6S5L8 630 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 NET1Q7Z628 596 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CSGALNACT2Q8N6G5 542 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ALLCQ8N6M5 410 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 LILRB1Q8NHL6 650 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CKAP2Q8WWK9 683 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CDKL2Q92772 493 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 DNAJC7Q99615 494 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 ACAT2Q9BWD1 397 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CDCA7Q9BWT1 371 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-216ENST00000637968 TRIM39Q9HCM9 518 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 CYLDQ9NQC7 956 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 THAP1Q9NVV9 213 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 IFT52Q9Y366 437 aa6.05□□□□□ -1.44
SCN1A-216ENST00000637968 NRXN1Q9ULB1 1477 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 FAM25AB3EWG3 89 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 FAM25CB3EWG5 89 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 FAM25GB3EWG6 89 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 MTSS1O43312 755 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 PHF2O75151 1096 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 MFN2O95140 757 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 VCLP18206 1134 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 PMLP29590 882 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 KPNA1P52294 538 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 SLC5A3P53794 718 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 TPTEP56180 551 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 HIC1Q14526 733 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF829Q3KNS6 432 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-216ENST00000637968 FAM122CQ6P4D5 195 aa6.04□□□□□ -1.44
SCN1A-216ENST00000637968 FASTKD5Q7L8L6 764 aaKnown RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms