RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 FXR2P51116 673 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLN3-255ENST00000637100 PFKPQ01813 784 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 ECM1Q16610 540 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 SPECC1Q5M775 1068 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 C3orf58Q8NDZ4 430 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 DEPTORQ8TB45 409 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 KIFAP3Q92845 792 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 RMDN1Q96DB5 314 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 DDX27Q96GQ7 796 aaKnown RBP18.09■□□□□ 0.49
CLN3-255ENST00000637100 FOXP1Q9H334 677 aaPredicted RBP18.09■□□□□ 0.49
CLN3-255ENST00000637100 GDE1Q9NZC3 331 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 GPR179Q6PRD1 2367 aa18.09■□□□□ 0.49
CLN3-255ENST00000637100 SMIM28A0A1B0GU29 152 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 ARHGEF35A5YM69 484 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 B3GAT3O94766 335 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 MICAL2O94851 1124 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 RFX1P22670 979 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 GRM5P41594 1212 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 CLCNKBP51801 687 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 FZD5Q13467 585 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 SNW1Q13573 536 aaKnown RBP18.08■□□□□ 0.48
CLN3-255ENST00000637100 TRIM29Q14134 588 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 MRPL58Q14197 206 aaKnown RBP18.08■□□□□ 0.48
CLN3-255ENST00000637100 ATF7IP2Q5U623 682 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 MAMSTRQ6ZN01 415 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 ANKS3Q6ZW76 656 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 ST13P5Q8NFI4 369 aaPredicted RBP18.08■□□□□ 0.48
CLN3-255ENST00000637100 ZNF461Q8TAF7 563 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 ERMNQ8TAM6 284 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 RUBCNQ92622 972 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 NELL2Q99435 816 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 LTB4R2Q9NPC1 389 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 HCFC1R1Q9NWW0 138 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 DLL3Q9NYJ7 618 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 CDY1Q9Y6F8 540 aa18.08■□□□□ 0.48
CLN3-255ENST00000637100 CEP250Q9BV73 2442 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 ABLIM1O14639 778 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 TRAPPC3O43617 180 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 TKTP29401 623 aaKnown RBP18.07■□□□□ 0.48
CLN3-255ENST00000637100 RPS9P46781 194 aaKnown RBP18.07■□□□□ 0.48
CLN3-255ENST00000637100 TRAPPC10P48553 1259 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 SOX4Q06945 474 aaPredicted RBP18.07■□□□□ 0.48
CLN3-255ENST00000637100 PDIA5Q14554 519 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 PABPC1LQ4VXU2 614 aaKnown RBP18.07■□□□□ 0.48
CLN3-255ENST00000637100 ZNF687Q8N1G0 1237 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 ZBTB44Q8NCP5 570 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 ACO2Q99798 780 aaKnown RBP18.07■□□□□ 0.48
CLN3-255ENST00000637100 TMEM134Q9H6X4 195 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 GDAQ9Y2T3 454 aa18.07■□□□□ 0.48
CLN3-255ENST00000637100 MTF2Q9Y483 593 aaPredicted RBP18.07■□□□□ 0.48
CLN3-255ENST00000637100 COL4A3Q01955 1670 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 KCNE1P15382 129 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 PROZP22891 400 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 NEK4P51957 841 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 PRSS36Q5K4E3 855 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 HAUS3Q68CZ6 603 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 TAS1R3Q7RTX0 852 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 TCEAL8Q8IYN2 117 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 DAW1Q8N136 415 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 IGSF22Q8N9C0 903 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 FBXO18Q8NFZ0 1043 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 KCNG4Q8TDN1 519 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 IFT74Q96LB3 600 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 LLPHQ9BRT6 129 aaKnown RBP18.06■□□□□ 0.48
CLN3-255ENST00000637100 NTPCRQ9BSD7 190 aaKnown RBP18.06■□□□□ 0.48
CLN3-255ENST00000637100 KIFC3Q9BVG8 833 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 BCO2Q9BYV7 579 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 ARHGAP28Q9P2N2 729 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 PATJQ8NI35 1801 aa18.06■□□□□ 0.48
CLN3-255ENST00000637100 K7ERI5 159 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 SYN3O14994 580 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 SPTLC1O15269 473 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 LILRB5O75023 590 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 RHOP08100 348 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 ATF2P15336 505 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 BRCC3P46736 316 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 ROR1Q01973 937 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 SAFBQ15424 915 aaKnown RBP eCLIP18.05■□□□□ 0.48
CLN3-255ENST00000637100 ZNF174Q15697 407 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 SLC5A9Q2M3M2 681 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 GLRA4Q5JXX5 417 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 APBB1IPQ7Z5R6 666 aaPredicted RBP18.05■□□□□ 0.48
CLN3-255ENST00000637100 ELSPBP1Q96BH3 223 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 ZMAT2Q96NC0 199 aaKnown RBP18.05■□□□□ 0.48
CLN3-255ENST00000637100 PLA2G2FQ9BZM2 168 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 CDT1Q9H211 546 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 BHMT2Q9H2M3 363 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 GOLGA2P5Q9HBQ8 144 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 MRPS23Q9Y3D9 190 aaKnown RBP18.05■□□□□ 0.48
CLN3-255ENST00000637100 PCDHGA2Q9Y5H1 932 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 DNAH14Q0VDD8 3507 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 MIA3Q5JRA6 1907 aa18.05■□□□□ 0.48
CLN3-255ENST00000637100 PHLPP2Q6ZVD8 1323 aa18.04■□□□□ 0.48
CLN3-255ENST00000637100 FAM170BA6NMN3 283 aa18.04■□□□□ 0.48
CLN3-255ENST00000637100 MEFVO15553 781 aaPredicted RBP18.04■□□□□ 0.48
CLN3-255ENST00000637100 PTPN2P17706 415 aa18.04■□□□□ 0.48
CLN3-255ENST00000637100 FCARP24071 287 aa18.04■□□□□ 0.48
CLN3-255ENST00000637100 NPTX2P47972 431 aa18.04■□□□□ 0.48
CLN3-255ENST00000637100 PUM1Q14671 1186 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLN3-255ENST00000637100 CEP120Q8N960 986 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms