RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 RUBCNQ92622 972 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 FAM212AQ96EL1 285 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 LOC102724159A0A0B4J2E5 919 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 RAD51CO43502 376 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 PHACTR2O75167 634 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 SLC26A2P50443 739 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 GTF2A2P52657 109 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 GUCY2DQ02846 1103 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 MESDQ14696 234 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 PWP2Q15269 919 aaKnown RBP16.79■□□□□ 0.28
CLN3-251ENST00000636853 CDR2LQ86X02 465 aaPredicted RBP16.79■□□□□ 0.28
CLN3-251ENST00000636853 ZNF653Q96CK0 615 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 BTBD6Q96KE9 485 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 EPB41L5Q9HCM4 733 aa16.79■□□□□ 0.28
CLN3-251ENST00000636853 UMODL1Q5DID0 1318 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 KRIT1O00522 736 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 ITGA4P13612 1032 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 KCTD19Q17RG1 926 aaPredicted RBP16.78■□□□□ 0.28
CLN3-251ENST00000636853 ACAD10Q6JQN1 1059 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 MAMDC4Q6UXC1 1216 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 BRSK2Q8IWQ3 736 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 EXOC8Q8IYI6 725 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 ERAP1Q9NZ08 941 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 HPCAL4Q9UM19 191 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 NUB1Q9Y5A7 615 aa16.78■□□□□ 0.28
CLN3-251ENST00000636853 INO80B-WBP1J3KQ70 363 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 ABLIM1O14639 778 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 B4GALT5O43286 388 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 ADCYAP1R1P41586 468 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 CARSP49589 748 aaKnown RBP16.77■□□□□ 0.28
CLN3-251ENST00000636853 GPS2Q13227 327 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 ZNF211Q13398 564 aaPredicted RBP16.77■□□□□ 0.28
CLN3-251ENST00000636853 CUL2Q13617 745 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 TCEAL1Q15170 157 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 CLEC16AQ2KHT3 1053 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 SND1Q7KZF4 910 aaKnown RBP eCLIP16.77■□□□□ 0.281e-7■■■□□ 15.8
CLN3-251ENST00000636853 MSL3Q8N5Y2 521 aaKnown RBP16.77■□□□□ 0.28
CLN3-251ENST00000636853 CCDC102AQ96A19 550 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 FAM81BQ96LP2 452 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 NUP85Q9BW27 656 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 INO80BQ9C086 356 aaPredicted RBP16.77■□□□□ 0.28
CLN3-251ENST00000636853 DDX47Q9H0S4 455 aaKnown RBP16.77■□□□□ 0.28
CLN3-251ENST00000636853 C2orf40Q9H1Z8 148 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 GDF3Q9NR23 364 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 PCNTO95613 3336 aa16.77■□□□□ 0.28
CLN3-251ENST00000636853 OGTO15294 1046 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 CST3P01034 146 aaPredicted RBP16.77■□□□□ 0.27
CLN3-251ENST00000636853 LGALS2P05162 132 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 INSRRP14616 1297 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 ACO1P21399 889 aaKnown RBP16.77■□□□□ 0.27
CLN3-251ENST00000636853 NOP14P78316 857 aaKnown RBP16.77■□□□□ 0.27
CLN3-251ENST00000636853 LAMC2Q13753 1193 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 NCOA4Q13772 614 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 TRADDQ15628 312 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 NAA35Q5VZE5 725 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 C11orf63Q6NUN7 778 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 CPNE8Q86YQ8 564 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 IFT20Q8IY31 132 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 AFG1LQ8WV93 481 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 IFT81Q8WYA0 676 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 ALG3Q92685 438 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 JPH2Q9BR39 696 aaPredicted RBP16.77■□□□□ 0.27
CLN3-251ENST00000636853 MINDY3Q9H8M7 445 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.77■□□□□ 0.27
CLN3-251ENST00000636853 PCDHB4Q9Y5E5 795 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 IVNS1ABPQ9Y6Y0 642 aa16.77■□□□□ 0.27
CLN3-251ENST00000636853 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 FGGP02679 453 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 CYP1A2P05177 515 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 ZNF286BP0CG31 522 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 COMTP21964 271 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 SSTR3P32745 418 aaPredicted RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 GYS2P54840 703 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 OSTNP61366 133 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 MCL1Q07820 350 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 TMEM132AQ24JP5 1023 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 ZNF564Q8TBZ8 553 aaPredicted RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 KRT35Q92764 455 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 PPP1R16BQ96T49 567 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 MTMR12Q9C0I1 747 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 VIPAS39Q9H9C1 493 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 GBA2Q9HCG7 927 aaPredicted RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 SLC45A1Q9Y2W3 748 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 PCDHB2Q9Y5E7 798 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 CSDE1O75534 798 aaKnown RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 ECM2O94769 699 aaPredicted RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 C22orf31O95567 290 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 GH1P01241 217 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 CLTAP09496 248 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 MARCKSL1P49006 195 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 TFDP1Q14186 410 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 AADACL2Q6P093 401 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 TMEM270Q6UE05 265 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 ADAT2Q7Z6V5 191 aaKnown RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 THNSL1Q8IYQ7 743 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 CASKIN2Q8WXE0 1202 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 CPA5Q8WXQ8 436 aa16.76■□□□□ 0.27
CLN3-251ENST00000636853 CALR3Q96L12 384 aaKnown RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 RNPC3Q96LT9 517 aaKnown RBP16.76■□□□□ 0.27
CLN3-251ENST00000636853 VTA1Q9NP79 307 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms