RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ANKK1Q8NFD2 765 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 RAB3IL1Q8TBN0 382 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF384Q8TF68 577 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 U2AF1L4Q8WU68 220 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 TMEM87BQ96K49 555 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CNOT6LQ96LI5 555 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PHF12Q96QT6 1004 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 TUT1Q9H6E5 874 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 USP29Q9HBJ7 922 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 GID8Q9NWU2 228 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 KCNJ14Q9UNX9 436 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF330Q9Y3S2 320 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 IVNS1ABPQ9Y6Y0 642 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF532Q9HCE3 1301 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 SSU72P8A0A1W2PR75 194 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 BICDL2A1A5D9 508 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 LRRC53A6NM62 1247 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CNOT3O75175 753 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 FGFR1OPO95684 399 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 POLR2EP19388 210 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 KLRC1P26715 233 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 HNRNPH3P31942 346 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PHKA1P46020 1223 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CHN2P52757 468 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CTDSPL2Q05D32 466 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CDC16Q13042 620 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 AUHQ13825 339 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 IL17AQ16552 155 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF423Q2M1K9 1284 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 FYB2Q5VWT5 728 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ADGRA1Q86SQ6 560 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CABP7Q86V35 215 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 LRRC49Q8IUZ0 686 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CRACR2BQ8N4Y2 399 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 OXER1Q8TDS5 423 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PPP1R10Q96QC0 940 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ERGIC2Q96RQ1 377 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 BTBD10Q9BSF8 475 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ROPN1BQ9BZX4 212 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 SLC7A5P2Q9GIP4 190 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ROPN1Q9HAT0 212 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 SAR1AQ9NR31 198 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 MRGBPQ9NV56 204 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 QPCTLQ9NXS2 382 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PARP2Q9UGN5 583 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ATP6V0A2Q9Y487 856 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CTDP1Q9Y5B0 961 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 B4E1Z4 1266 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 ADCY6O43306 1168 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 SPAG7O75391 227 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 HAUS5O94927 633 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 STAMBPO95630 424 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 EIF2S1P05198 315 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CDH3P22223 829 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PPARGP37231 505 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 RCAN1P53805 252 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 FKBP4Q02790 459 aaKnown RBP eCLIP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 LRP8Q14114 963 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 NR1D2Q14995 579 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 FXNQ16595 210 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PTPROQ16827 1216 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 METTL24Q5JXM2 366 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 RFX8Q6ZV50 586 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PEX26Q7Z412 305 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 FAM161BQ96MY7 647 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CADM1Q9BY67 442 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 FOXP1Q9H334 677 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CNGB3Q9NQW8 809 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 SNX24Q9Y343 169 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 LTBP1Q14766 1721 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 GREB1LQ9C091 1923 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 UBR3Q6ZT12 1888 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 FAM205CA6NFA0 338 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 TTLL13PA6NNM8 815 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF213O14771 459 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 EXOC3O60645 756 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 KRT75O95678 551 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 SCG2P13521 617 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 ANPEPP15144 967 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 EPS15P42566 896 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 DR1Q01658 176 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 BTKQ06187 659 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 KRT81Q14533 505 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 PUM3Q15397 648 aaKnown RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 WDR78Q5VTH9 848 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 NLRP9Q7RTR0 991 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 BPHLQ86WA6 291 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC125Q86Z20 511 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 OR6Y1Q8NGX8 325 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 ANKS1AQ92625 1134 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 ZFRQ96KR1 1074 aaKnown RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC85AQ96PX6 553 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 MYL10Q9BUA6 226 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 SEMA4AQ9H3S1 761 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 EBF3Q9H4W6 596 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 TRNAU1APQ9NX07 287 aaKnown RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 TBC1D30Q9Y2I9 924 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 RBMX2Q9Y388 322 aaKnown RBP7.24□□□□□ -1.25
SCN1A-213ENST00000636759 TELO2Q9Y4R8 837 aa7.24□□□□□ -1.25
SCN1A-213ENST00000636759 SLC12A7Q9Y666 1083 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms