RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ACCSQ96QU6 501 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 TMEM175Q9BSA9 504 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 CDT1Q9H211 546 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 S1PR5Q9H228 398 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 NR2E1Q9Y466 385 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 CLDN3O15551 220 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 PPP1R37O75864 691 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 RPN1P04843 607 aaKnown RBP19.78■□□□□ 0.76
CLN3-243ENST00000635973 MCF2P10911 925 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 AKAP5P24588 427 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 CASP5P51878 434 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 NOLC1Q14978 699 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-243ENST00000635973 CLEC17AQ6ZS10 378 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 PPFIBP1Q86W92 1011 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 NECTIN4Q96NY8 510 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 RPS6KC1Q96S38 1066 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 EMILIN2Q9BXX0 1053 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 FGFBP2Q9BYJ0 223 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 RNF39Q9H2S5 420 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 DZANK1Q9NVP4 752 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 SNTG2Q9NY99 539 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 GDAQ9Y2T3 454 aa19.78■□□□□ 0.76
CLN3-243ENST00000635973 DDHD2O94830 711 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 PRPF6O94906 941 aaKnown RBP19.77■□□□□ 0.76
CLN3-243ENST00000635973 PIGRP01833 764 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 MLH1P40692 756 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 DPYDQ12882 1025 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 KMT5BQ4FZB7 885 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 ZBTB45Q96K62 511 aaPredicted RBP19.77■□□□□ 0.76
CLN3-243ENST00000635973 RIPOR3Q96MK2 946 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 TIGD1Q96MW7 591 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 CCDC94Q9BW85 323 aaPredicted RBP19.77■□□□□ 0.76
CLN3-243ENST00000635973 ADAM7Q9H2U9 754 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 PTPRHQ9HD43 1115 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 GIT1Q9Y2X7 761 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 IRAK3Q9Y616 596 aa19.77■□□□□ 0.76
CLN3-243ENST00000635973 NRP1O14786 923 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 RECQL4O94761 1208 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 PROZP22891 400 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 SP100P23497 879 aaPredicted RBP19.76■□□□□ 0.75
CLN3-243ENST00000635973 MTHFRP42898 656 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 OR1G1P47890 313 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 YARSP54577 528 aaKnown RBP19.76■□□□□ 0.75
CLN3-243ENST00000635973 OSTNP61366 133 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 PNOCQ13519 176 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 RARS2Q5T160 578 aaKnown RBP19.76■□□□□ 0.75
CLN3-243ENST00000635973 GLIS3Q8NEA6 775 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 BCL7CQ8WUZ0 217 aaPredicted RBP19.76■□□□□ 0.75
CLN3-243ENST00000635973 GAD1Q99259 594 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 TMEM206Q9H813 350 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 SLC39A2Q9NP94 309 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 MRPL17Q9NRX2 175 aaKnown RBP19.76■□□□□ 0.75
CLN3-243ENST00000635973 KLK14Q9P0G3 267 aa19.76■□□□□ 0.75
CLN3-243ENST00000635973 ARL5CA6NH57 179 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 EIF3DO15371 548 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLN3-243ENST00000635973 KLRC4O43908 158 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 SMC2O95347 1197 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 KLRC2P26717 231 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 AFF1P51825 1210 aaKnown RBP19.75■□□□□ 0.75
CLN3-243ENST00000635973 ZXDAP98168 799 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 MCL1Q07820 350 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 EHHADHQ08426 723 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 KCNA1Q09470 495 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 ATAT1Q5SQI0 421 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 SLFN12LQ6IEE8 588 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 TRIM67Q6ZTA4 783 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 HFE2Q6ZVN8 426 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 CEP120Q8N960 986 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 ZFP42Q96MM3 310 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 MSTO1Q9BUK6 570 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 STRA6Q9BX79 667 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 TOPORSQ9NS56 1045 aaPredicted RBP19.75■□□□□ 0.75
CLN3-243ENST00000635973 SSX2IPQ9Y2D8 614 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 PRG3Q9Y2Y8 225 aaPredicted RBP19.75■□□□□ 0.75
CLN3-243ENST00000635973 MUC6Q6W4X9 2439 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 UBE4BO95155 1302 aa19.75■□□□□ 0.75
CLN3-243ENST00000635973 ZMYM2Q9UBW7 1377 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 ABLIM1O14639 778 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 URODP06132 367 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 EPCAMP16422 314 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 GRM5P41594 1212 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 SCNN1GP51170 649 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 PSMD2Q13200 908 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 PTPN14Q15678 1187 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 POMGNT1Q8WZA1 660 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 PBXIP1Q96AQ6 731 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 ACAP3Q96P50 834 aa19.74■□□□□ 0.75
CLN3-243ENST00000635973 TMEM221A6NGB7 291 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 TISP43B9A030 160 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 M0R296 226 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 C2CD2LO14523 706 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 B4GALT3O60512 393 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 KIAA1841Q6NSI8 718 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 SLC39A4Q6P5W5 647 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 ELMSAN1Q6PJG2 1045 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 SUGP1Q8IWZ8 645 aaKnown RBP19.73■□□□□ 0.75
CLN3-243ENST00000635973 NELFCDQ8IXH7 590 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 C12orf76Q8N812 135 aaPredicted RBP19.73■□□□□ 0.75
CLN3-243ENST00000635973 SMARCE1Q969G3 411 aa19.73■□□□□ 0.75
CLN3-243ENST00000635973 COLEC11Q9BWP8 271 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms