RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FUBP1Q96AE4 644 aaKnown RBP4.22□□□□□ -1.73
SCN1A-208ENST00000625916 RNPC3Q96LT9 517 aaKnown RBP4.22□□□□□ -1.73
SCN1A-208ENST00000625916 FEZ1Q99689 392 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 TMEM74BQ9NUR3 256 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 FANCLQ9NW38 375 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 MOCS1Q9NZB8 636 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 KCNE5Q9UJ90 142 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 AATKQ6ZMQ8 1374 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 ERN1O75460 977 aaKnown RBP4.21□□□□□ -1.74
SCN1A-208ENST00000625916 C1QL1O75973 258 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 IL2RBP14784 551 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 GCSHP23434 173 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 SRSF4Q08170 494 aaKnown RBP4.21□□□□□ -1.74
SCN1A-208ENST00000625916 FSCN1Q16658 493 aaKnown RBP4.21□□□□□ -1.74
SCN1A-208ENST00000625916 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.21□□□□□ -1.74
SCN1A-208ENST00000625916 CCDC144BQ3MJ40 725 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 THNSL2Q86YJ6 484 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 COLGALT2Q8IYK4 626 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 STON2Q8WXE9 905 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 RAX2Q96IS3 184 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 PDLIM2Q96JY6 352 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 ACAP3Q96P50 834 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 SENP6Q9GZR1 1112 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-208ENST00000625916 IL17RBQ9NRM6 502 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 ASB6Q9NWX5 421 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 USP25Q9UHP3 1055 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 ATRNL1Q5VV63 1379 aa4.21□□□□□ -1.74
SCN1A-208ENST00000625916 PROP1O75360 226 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 SLC6A2P23975 617 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 UBXN2BQ14CS0 331 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 CYP2A13Q16696 494 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 GJC2Q5T442 439 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-208ENST00000625916 ZNF529Q6P280 563 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 Q6ZVL8 140 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 PQLC1Q8N2U9 271 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 SCARB1Q8WTV0 552 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 USP7Q93009 1102 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 NACC2Q96BF6 587 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 MFSD3Q96ES6 412 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 UNKLQ9H9P5 680 aaKnown RBP4.2□□□□□ -1.74
SCN1A-208ENST00000625916 TOPORSQ9NS56 1045 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-208ENST00000625916 KCTD5Q9NXV2 234 aa4.2□□□□□ -1.74
SCN1A-208ENST00000625916 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-208ENST00000625916 CCDC78A2IDD5 438 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 WNT10BO00744 389 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 PEX1O43933 1283 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 ENPP1P22413 925 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 SREBF1P36956 1147 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 VAV2P52735 878 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 LDAHQ9H6V9 325 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 KMT5AQ9NQR1 393 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 LANCL2Q9NS86 450 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 PLAAQ9Y263 795 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 SIK3Q9Y2K2 1263 aa4.19□□□□□ -1.74
SCN1A-208ENST00000625916 ORC4O43929 436 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 PRSS23O95084 383 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 CKBP12277 381 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 ALDH1A3P47895 512 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 ZNF81P51508 661 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 ZNF788Q6ZQV5 615 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 GRASPQ7Z6J2 395 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-208ENST00000625916 LNX2Q8N448 690 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 SH2D3CQ8N5H7 860 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 SSH3Q8TE77 659 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 AUTS2Q8WXX7 1259 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 FATE1Q969F0 183 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 MARS2Q96GW9 593 aaKnown RBP4.18□□□□□ -1.74
SCN1A-208ENST00000625916 UROC1Q96N76 676 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 PIF1Q9H611 641 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 TMEM140Q9NV12 185 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 FBXO34Q9NWN3 711 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 ARPP21Q9UBL0 812 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-208ENST00000625916 ZBTB21Q9ULJ3 1066 aa4.18□□□□□ -1.74
SCN1A-208ENST00000625916 COL3A1P02461 1466 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-208ENST00000625916 TRGV11A0A075B6L2 103 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 PROB1E7EW31 1015 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 ULK1O75385 1050 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 CDC45O75419 566 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 SESN3P58005 492 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 ADRM1Q16186 407 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 GEN1Q17RS7 908 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 DALRD3Q5D0E6 543 aaKnown RBP4.17□□□□□ -1.74
SCN1A-208ENST00000625916 MUM1L1Q5H9M0 696 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 OTUD7BQ6GQQ9 843 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 UBE3BQ7Z3V4 1068 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 CLRN3Q8NCR9 226 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 TSPEARQ8WU66 669 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 ANKS1AQ92625 1134 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 PNKPQ96T60 521 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 QRSL1Q9H0R6 528 aaKnown RBP4.17□□□□□ -1.74
SCN1A-208ENST00000625916 GREM2Q9H772 168 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 CPNE5Q9HCH3 593 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 RBM12Q9NTZ6 932 aaKnown RBP4.17□□□□□ -1.74
SCN1A-208ENST00000625916 FAM30AQ9NZY2 134 aa4.17□□□□□ -1.74
SCN1A-208ENST00000625916 AJAP1Q9UKB5 411 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-208ENST00000625916 GSG1L2A8MUP6 293 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 YY2O15391 372 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 TEX33O43247 280 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 ALAS1P13196 640 aa4.16□□□□□ -1.74
SCN1A-208ENST00000625916 FPR1P21462 350 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms