RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TRAPPC3LQ5T215 181 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 PI16Q6UXB8 463 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 CCNYL1Q8N7R7 359 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 GLG1Q92896 1179 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.38□□□□□ -0.91
VCL-206ENST00000623461 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.38□□□□□ -0.91
VCL-206ENST00000623461 DMAP1Q9NPF5 467 aaPredicted RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 CYP39A1Q9NYL5 469 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 UGGT1Q9NYU2 1555 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 IVNS1ABPQ9Y6Y0 642 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 IQSEC2Q5JU85 1478 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 EIF3DO15371 548 aaKnown RBP eCLIP9.38□□□□□ -0.91
VCL-206ENST00000623461 WDR47O94967 919 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 TMTC4Q5T4D3 741 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 GORASP1Q9BQQ3 440 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 C11orf70Q9BRQ4 267 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 FRMD8Q9BZ67 464 aaPredicted RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 SLC9A2Q9UBY0 812 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 COMMD3-BMI1R4GMX3 469 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 A0A0A6YYK5 440 aaPredicted RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 F8VZ95 297 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 CLDN3O15551 220 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 ZBTB41Q5SVQ8 909 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 MIS18BP1Q6P0N0 1132 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 FRA10AC1Q70Z53 315 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 KLHL23Q8NBE8 558 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 BTBD10Q9BSF8 475 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 ATAD3AQ9NVI7 634 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 AP3B1O00203 1094 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 DCTN2Q13561 401 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 PATL1Q86TB9 770 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 EPS8L3Q8TE67 593 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 SCN3BQ9NY72 215 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 DMGDHQ9UI17 866 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 M0QZ92 97 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 TNFAIP8O95379 198 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 PPIDQ08752 370 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 Q4G0T1 1027 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 B3GNT6Q6ZMB0 384 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 ZNF280CQ8ND82 737 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 SLC7A3Q8WY07 619 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 CDYLQ9Y232 598 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 LEMD3Q9Y2U8 911 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 CAB39Q9Y376 341 aaPredicted RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 ANGPT2O15123 496 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 FAM58BPP0C7Q3 252 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 ALDH5A1P51649 535 aaPredicted RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 TCP10Q12799 353 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 MEI1Q5TIA1 1274 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 CEP170P1Q96L14 293 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 RNPEPL1Q9HAU8 725 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 TUBA8Q9NY65 449 aaPredicted RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 ARHGEF40Q8TER5 1519 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 ZNF609O15014 1411 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 USP6P35125 1406 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 ZNF804BA4D1E1 1349 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 GTPBP10A4D1E9 387 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 FDPSP14324 419 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 MLH1P40692 756 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 GSTA3Q16772 222 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 ARL13BQ3SXY8 428 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 C4orf22Q6V702 233 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 CABLES1Q8TDN4 633 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 KANSL2Q9H9L4 492 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 RPL26L1Q9UNX3 145 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 GOLGA8IPA6NC78 632 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 GOLGA8JA6NMD2 632 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 RFC5P40937 340 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 HSPA2P54652 639 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 GRM1Q13255 1194 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 CTTNQ14247 550 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 EFHC1Q5JVL4 640 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 CDKAL1Q5VV42 579 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 TMPRSS6Q8IU80 811 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 TMA16Q96EY4 203 aaKnown RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 ZMYND8Q9ULU4 1186 aaPredicted RBP9.37□□□□□ -0.91
VCL-206ENST00000623461 PCDHA6Q9UN73 950 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 PCDHA8Q9Y5H6 950 aa9.37□□□□□ -0.91
VCL-206ENST00000623461 PP2D1A8MPX8 630 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 TM9SF1O15321 606 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 ZNF18P17022 549 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 DIABLOQ9NR28 239 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 COPG1Q9Y678 874 aaKnown RBP9.36□□□□□ -0.91
VCL-206ENST00000623461 AIM2O14862 343 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 ALAS1P13196 640 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 PRELPP51888 382 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 EIF3EP60228 445 aaKnown RBP9.36□□□□□ -0.91
VCL-206ENST00000623461 FAM47CQ5HY64 1035 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 SYDE2Q5VT97 1194 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 HEATR6Q6AI08 1181 aaKnown RBP9.36□□□□□ -0.91
VCL-206ENST00000623461 ZNF746Q6NUN9 644 aaPredicted RBP9.36□□□□□ -0.91
VCL-206ENST00000623461 TNIP2Q8NFZ5 429 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 CDHR1Q96JP9 859 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 TEX12Q9BXU0 123 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 COG4Q9H9E3 785 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 SAC3D1A6NKF1 404 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 H2AFYO75367 372 aaKnown RBP9.36□□□□□ -0.91
VCL-206ENST00000623461 WFS1O76024 890 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 THRAP10827 490 aa9.36□□□□□ -0.91
VCL-206ENST00000623461 KCNA6P17658 529 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms