RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 NMD3Q96D46 503 aaKnown RBP9.22□□□□□ -0.93
TTC28-208ENST00000612946 XAGE2Q96GT9 111 aa9.22□□□□□ -0.93
TTC28-208ENST00000612946 LRRC1Q9BTT6 524 aa9.22□□□□□ -0.93
TTC28-208ENST00000612946 CYP4F11Q9HBI6 524 aa9.22□□□□□ -0.93
TTC28-208ENST00000612946 TMBIM4Q9HC24 238 aa9.22□□□□□ -0.93
TTC28-208ENST00000612946 KIAA1586Q9HCI6 787 aa9.22□□□□□ -0.93
TTC28-208ENST00000612946 SERPINB13Q9UIV8 391 aa9.22□□□□□ -0.93
TTC28-208ENST00000612946 ADGRA2Q96PE1 1338 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 ECM2O94769 699 aaPredicted RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 PLOD1Q02809 727 aaPredicted RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 PPARDQ03181 441 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 CCDC142Q17RM4 750 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 DEPTORQ8TB45 409 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 GLMNQ92990 594 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 SRGAP2O75044 1071 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 TAF5LO75529 589 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 BAIAP3O94812 1187 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 TRIM25Q14258 630 aaKnown RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 TAF12Q16514 161 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 TTC39BQ5VTQ0 682 aaPredicted RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 COPS6Q7L5N1 327 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.21□□□□□ -0.93
TTC28-208ENST00000612946 SUN5Q8TC36 379 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 NUP85Q9BW27 656 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 PDE4DIPQ5VU43 2346 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 GNB5O14775 395 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 CNOT3O75175 753 aaKnown RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 CD2BP2O95400 341 aaKnown RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 BRDTQ58F21 947 aaPredicted RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 KHDRBS2Q5VWX1 349 aaKnown RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 RRN3Q9NYV6 651 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 AK5Q9Y6K8 562 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 SF3B1O75533 1304 aaKnown RBP eCLIP9.21□□□□□ -0.93
TTC28-208ENST00000612946 PRPF3O43395 683 aaKnown RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 HADHAP40939 763 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 STAT5AP42229 794 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 STAT5BP51692 787 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 CCDC85BQ15834 202 aaPredicted RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 SLC18A3Q16572 532 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 CD302Q8IX05 232 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 ZNF786Q8N393 782 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 GIMAP8Q8ND71 665 aaPredicted RBP9.21□□□□□ -0.93
TTC28-208ENST00000612946 HPS1Q92902 700 aa9.21□□□□□ -0.93
TTC28-208ENST00000612946 LRRC53A6NM62 1247 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 WDR64B1ANS9 1081 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 TSHZ1Q6ZSZ6 1077 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 ERP44Q9BS26 406 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 GTSE1Q9NYZ3 720 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 KRT87PA6NCN2 255 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 NPTXRO95502 500 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 NR1I3Q14994 352 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 MZT2BQ6NZ67 158 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 BNC2Q6ZN30 1099 aaPredicted RBP9.21□□□□□ -0.94
TTC28-208ENST00000612946 KCTD17Q8N5Z5 321 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 SCAIQ8N9R8 606 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 WDR11Q9BZH6 1224 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 BTBD3Q9Y2F9 522 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 PPME1Q9Y570 386 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 SNX2O60749 519 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 PDCD4Q53EL6 469 aaKnown RBP9.21□□□□□ -0.94
TTC28-208ENST00000612946 FRMD5Q7Z6J6 570 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 TEX13BQ9BXU2 312 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 PARVAQ9NVD7 372 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 C1DQ13901 141 aaKnown RBP9.21□□□□□ -0.94
TTC28-208ENST00000612946 ACAP2Q15057 778 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 ZMYM1Q5SVZ6 1142 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 IZUMO3Q5VZ72 239 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 FAM45AQ8TCE6 357 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 KLHL3Q9UH77 587 aa9.21□□□□□ -0.94
TTC28-208ENST00000612946 TOP3AQ13472 1001 aaPredicted RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 FAM83BQ5T0W9 1011 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 PPP1R18Q6NYC8 613 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 KIF2BQ8N4N8 673 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 OATP04181 439 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 ZNF18P17022 549 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 WASHC5Q12768 1159 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 C16orf72Q14CZ0 275 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 FAM47CQ5HY64 1035 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 NET1Q7Z628 596 aaPredicted RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 NLRX1Q86UT6 975 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 RNASE11Q8TAA1 199 aaKnown RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 CLIC6Q96NY7 704 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 PHACTR1Q9C0D0 580 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 TLR7Q9NYK1 1049 aaKnown RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 TRAPPC3O43617 180 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 TSGA10IPQ3SY00 556 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 ZBED8Q8IZ13 594 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 PIK3C3Q8NEB9 887 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 C9orf16Q9BUW7 83 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 TRIM62Q9BVG3 475 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 MAPRE3Q9UPY8 281 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 TYW5A2RUC4 315 aaKnown RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 MAGEA8P43361 318 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 BCAP31P51572 246 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 YARSP54577 528 aaKnown RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 GPATCH4Q5T3I0 446 aaKnown RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 SNX30Q5VWJ9 437 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 OTUD7BQ6GQQ9 843 aa9.2□□□□□ -0.94
TTC28-208ENST00000612946 GSPT2Q8IYD1 628 aaKnown RBP9.2□□□□□ -0.94
TTC28-208ENST00000612946 GUF1Q8N442 669 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms