RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ACAP3Q96P50 834 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 PNMA5Q96PV4 448 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 PLIN2Q99541 437 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 TCHPQ9BT92 498 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 TIPINQ9BVW5 301 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 CCDC94Q9BW85 323 aaPredicted RBP8.36□□□□□ -1.07
CUX1-219ENST00000606749 MRPL4Q9BYD3 311 aaKnown RBP8.36□□□□□ -1.07
CUX1-219ENST00000606749 CDT1Q9H211 546 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 GOLGA2P5Q9HBQ8 144 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 TOPORSQ9NS56 1045 aaPredicted RBP8.36□□□□□ -1.07
CUX1-219ENST00000606749 FAM86C1Q9NVL1 165 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 WNT16Q9UBV4 365 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 KCNG1Q9UIX4 513 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 FBXL21Q9UKT6 434 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 ZDBF2Q9HCK1 2354 aa8.36□□□□□ -1.07
CUX1-219ENST00000606749 PHLPP2Q6ZVD8 1323 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 KRBA1A5PL33 1030 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 VWA3AA6NCI4 1184 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 H3BQV1 296 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 I3L4J1 428 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 CCL16O15467 120 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 TRAPPC3O43617 180 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 C8AP07357 584 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 CFHP08603 1231 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 MCF2P10911 925 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 SRFP11831 508 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 PLS3P13797 630 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 KCNE1P15382 129 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 FSHRP23945 695 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 TKTP29401 623 aaKnown RBP8.35□□□□□ -1.07
CUX1-219ENST00000606749 HOXA9P31269 272 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 BRCC3P46736 316 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 NTHL1P78549 312 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 RAD51AP2Q09MP3 1159 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 ZNF568Q3ZCX4 644 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 AXDND1Q5T1B0 1012 aaPredicted RBP8.35□□□□□ -1.07
CUX1-219ENST00000606749 LIN9Q5TKA1 542 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 ARL6IP4Q66PJ3 421 aaKnown RBP8.35□□□□□ -1.07
CUX1-219ENST00000606749 MPZL3Q6UWV2 235 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 RSPO2Q6UXX9 243 aaPredicted RBP8.35□□□□□ -1.07
CUX1-219ENST00000606749 ANKS3Q6ZW76 656 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 RTL10Q7L3V2 364 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 GET4Q7L5D6 327 aaPredicted RBP8.35□□□□□ -1.07
CUX1-219ENST00000606749 C3orf58Q8NDZ4 430 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 TMEM161BQ8NDZ6 487 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 SPIRE2Q8WWL2 714 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 RPP25Q9BUL9 199 aaKnown RBP8.35□□□□□ -1.07
CUX1-219ENST00000606749 SLC38A7Q9NVC3 462 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 MTRRQ9UBK8 725 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 BACE2Q9Y5Z0 518 aa8.35□□□□□ -1.07
CUX1-219ENST00000606749 ZFP37Q9Y6Q3 630 aaPredicted RBP8.35□□□□□ -1.07
CUX1-219ENST00000606749 DOCK6Q96HP0 2047 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 TRIP11Q15643 1979 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 NPHP3-ACAD11A0A0J9YXS1 232 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 PROB1E7EW31 1015 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 STK25O00506 426 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 PODXLO00592 558 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 MEFVO15553 781 aaPredicted RBP8.34□□□□□ -1.07
CUX1-219ENST00000606749 TBC1D4O60343 1298 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 XYLBO75191 536 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 TOM1L1O75674 476 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 PLA2G4BP0C869 781 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 MAPTP10636 758 aaKnown RBP8.34□□□□□ -1.07
CUX1-219ENST00000606749 AOC1P19801 751 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 RPL9P32969 192 aaKnown RBP8.34□□□□□ -1.07
CUX1-219ENST00000606749 MCM2P49736 904 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 SMTNP53814 917 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 STRN3Q13033 797 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 HTR4Q13639 388 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 SLC10A6Q3KNW5 377 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 TMEM119Q4V9L6 283 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 ARSHQ5FYA8 562 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 LARP1BQ659C4 914 aaKnown RBP8.34□□□□□ -1.07
CUX1-219ENST00000606749 ST13P5Q8NFI4 369 aaPredicted RBP8.34□□□□□ -1.07
CUX1-219ENST00000606749 ZNF461Q8TAF7 563 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 SLC7A14Q8TBB6 771 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 FGF13Q92913 245 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 C18orf25Q96B23 403 aaPredicted RBP8.34□□□□□ -1.07
CUX1-219ENST00000606749 SNX27Q96L92 541 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 RTP3Q9BQQ7 232 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 KCND2Q9NZV8 630 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 CNTN3Q9P232 1028 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 DNMT3BQ9UBC3 853 aaKnown RBP8.34□□□□□ -1.07
CUX1-219ENST00000606749 CDH7Q9ULB5 785 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 POLIQ9UNA4 740 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 SMC3Q9UQE7 1217 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 CDY1Q9Y6F8 540 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 NUMBLQ9Y6R0 609 aa8.34□□□□□ -1.07
CUX1-219ENST00000606749 VWA8A3KMH1 1905 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 DOCK8Q8NF50 2099 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 CLDN3O15551 220 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 SLC26A4O43511 780 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 GFRA3O60609 400 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 ABLIM3O94929 683 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 POU2F2P09086 479 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 NBL1P41271 181 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 MCL1Q07820 350 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 MRPL58Q14197 206 aaKnown RBP8.33□□□□□ -1.08
CUX1-219ENST00000606749 SEZ6Q53EL9 994 aa8.33□□□□□ -1.08
CUX1-219ENST00000606749 VARS2Q5ST30 1063 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms