RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 SCP2P22307 547 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 ZNF131P52739 623 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 SOX4Q06945 474 aaPredicted RBP28.48■■■□□ 2.15
PNKP-216ENST00000601816 MCL1Q07820 350 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 LILRA6Q6PI73 481 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 USP49Q70CQ1 688 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 LNX1Q8TBB1 728 aaPredicted RBP28.48■■■□□ 2.15
PNKP-216ENST00000601816 ACSF2Q96CM8 615 aaPredicted RBP28.48■■■□□ 2.15
PNKP-216ENST00000601816 DDX27Q96GQ7 796 aaKnown RBP28.48■■■□□ 2.15
PNKP-216ENST00000601816 ZMAT2Q96NC0 199 aaKnown RBP28.48■■■□□ 2.15
PNKP-216ENST00000601816 RHOBTB2Q9BYZ6 727 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 ZHX3Q9H4I2 956 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 ZSCAN16Q9H4T2 348 aaPredicted RBP28.48■■■□□ 2.15
PNKP-216ENST00000601816 CCDC39Q9UFE4 941 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 ARIH1Q9Y4X5 557 aaPredicted RBP28.48■■■□□ 2.15
PNKP-216ENST00000601816 DENND4AQ7Z401 1863 aa28.48■■■□□ 2.15
PNKP-216ENST00000601816 TXLNAP40222 546 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 SIGLEC14Q08ET2 396 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 OTOP3Q7RTS5 596 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 KREMEN2Q8NCW0 462 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 SNX21Q969T3 373 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 MFSD14AQ96MC6 490 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 ZDHHC7Q9NXF8 308 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 TECTAO75443 2155 aa28.47■■■□□ 2.15
PNKP-216ENST00000601816 TRAPPC3O43617 180 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 TRAK2O60296 914 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 FGFR3P22607 806 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 IGFBP6P24592 240 aaPredicted RBP28.46■■■□□ 2.15
PNKP-216ENST00000601816 DDIT3P35638 169 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 LIG4P49917 911 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 SEZ6Q53EL9 994 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 BMP8AQ7Z5Y6 402 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 C3orf58Q8NDZ4 430 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 SMG7Q92540 1137 aaKnown RBP28.46■■■□□ 2.15
PNKP-216ENST00000601816 CLIC6Q96NY7 704 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 USP28Q96RU2 1077 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 CLSTN3Q9BQT9 956 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 STK17AQ9UEE5 414 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 TBX20Q9UMR3 447 aa28.46■■■□□ 2.15
PNKP-216ENST00000601816 TRIP11Q15643 1979 aa28.45■■■□□ 2.14
PNKP-216ENST00000601816 PODXLO00592 558 aa28.45■■■□□ 2.14
PNKP-216ENST00000601816 CD300LGQ6UXG3 332 aa28.45■■■□□ 2.14
PNKP-216ENST00000601816 PIDD1Q9HB75 910 aa28.45■■■□□ 2.14
PNKP-216ENST00000601816 LIMD1Q9UGP4 676 aa28.45■■■□□ 2.14
PNKP-216ENST00000601816 FBXW11Q9UKB1 542 aa28.45■■■□□ 2.14
PNKP-216ENST00000601816 SORCS3Q9UPU3 1222 aa28.45■■■□□ 2.14
PNKP-216ENST00000601816 C2orf16Q68DN1 1984 aa28.44■■■□□ 2.14
PNKP-216ENST00000601816 HNRNPDLO14979 420 aaKnown RBP28.44■■■□□ 2.14
PNKP-216ENST00000601816 MEFVO15553 781 aaPredicted RBP28.44■■■□□ 2.14
PNKP-216ENST00000601816 CLTAP09496 248 aa28.44■■■□□ 2.14
PNKP-216ENST00000601816 BRCC3P46736 316 aa28.44■■■□□ 2.14
PNKP-216ENST00000601816 MTMR3Q13615 1198 aa28.44■■■□□ 2.14
PNKP-216ENST00000601816 SLC10A6Q3KNW5 377 aa28.44■■■□□ 2.14
PNKP-216ENST00000601816 KRI1Q8N9T8 703 aaKnown RBP28.44■■■□□ 2.14
PNKP-216ENST00000601816 PBXIP1Q96AQ6 731 aa28.44■■■□□ 2.14
PNKP-216ENST00000601816 ZNF707Q96C28 371 aaPredicted RBP28.44■■■□□ 2.14
PNKP-216ENST00000601816 HAPLN2Q9GZV7 340 aa28.44■■■□□ 2.14
PNKP-216ENST00000601816 WDR6Q9NNW5 1121 aaKnown RBP28.44■■■□□ 2.14
PNKP-216ENST00000601816 MORC2Q9Y6X9 1032 aaPredicted RBP28.44■■■□□ 2.14
PNKP-216ENST00000601816 I3L4J1 428 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 ZMYND10O75800 440 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 PAPLNO95428 1278 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 PIGRP01833 764 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 ASGR2P07307 311 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 TKTP29401 623 aaKnown RBP28.43■■■□□ 2.14
PNKP-216ENST00000601816 RPL9P32969 192 aaKnown RBP28.43■■■□□ 2.14
PNKP-216ENST00000601816 ABCD1P33897 745 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 SLC39A14Q15043 492 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 LIN9Q5TKA1 542 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 RRAGBQ5VZM2 374 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 HSCBQ8IWL3 235 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 UBALD2Q8IYN6 164 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 STAMQ92783 540 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 C18orf25Q96B23 403 aaPredicted RBP28.43■■■□□ 2.14
PNKP-216ENST00000601816 MTRRQ9UBK8 725 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 CITO14578 2027 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 TRIOO75962 3097 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 CLUHO75153 1309 aa28.43■■■□□ 2.14
PNKP-216ENST00000601816 VWA8A3KMH1 1905 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 ADAM12O43184 909 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 CXCL8P10145 99 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 PLA2G5P39877 138 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 KYAT1Q16773 422 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 ANKS3Q6ZW76 656 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 FAM122AQ96E09 287 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 PRKD2Q9BZL6 878 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 PLEKHA5Q9HAU0 1116 aa28.42■■■□□ 2.14
PNKP-216ENST00000601816 RAB33AQ14088 237 aa28.41■■■□□ 2.14
PNKP-216ENST00000601816 ASIC4Q96FT7 647 aa28.41■■■□□ 2.14
PNKP-216ENST00000601816 FIZ1Q96SL8 496 aa28.41■■■□□ 2.14
PNKP-216ENST00000601816 NUB1Q9Y5A7 615 aa28.41■■■□□ 2.14
PNKP-216ENST00000601816 BACE2Q9Y5Z0 518 aa28.41■■■□□ 2.14
PNKP-216ENST00000601816 MTCL1Q9Y4B5 1905 aaKnown RBP28.41■■■□□ 2.14
PNKP-216ENST00000601816 NMT1P30419 496 aaKnown RBP28.4■■■□□ 2.14
PNKP-216ENST00000601816 OR1D2P34982 312 aa28.4■■■□□ 2.14
PNKP-216ENST00000601816 GTF2BQ00403 316 aa28.4■■■□□ 2.14
PNKP-216ENST00000601816 DYMQ7RTS9 669 aa28.4■■■□□ 2.14
PNKP-216ENST00000601816 MAP4K3Q8IVH8 894 aa28.4■■■□□ 2.14
PNKP-216ENST00000601816 SUGP1Q8IWZ8 645 aaKnown RBP28.4■■■□□ 2.14
PNKP-216ENST00000601816 OGTO15294 1046 aa28.39■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms