RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EFL1Q7Z2Z2 1120 aaKnown RBP21.58■■□□□ 1.05
UPF1-207ENST00000599848 ENGASEQ8NFI3 743 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 A0A087WUV0 522 aaPredicted RBP21.58■■□□□ 1.05
UPF1-207ENST00000599848 CLTAP09496 248 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 POU5F1BQ06416 359 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 ZBTB41Q5SVQ8 909 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 ANKRD40Q6AI12 368 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 KANSL3Q9P2N6 904 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 PCSK1NQ9UHG2 260 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 NDUFS3O75489 264 aa21.58■■□□□ 1.04
UPF1-207ENST00000599848 SLC26A2P50443 739 aa21.58■■□□□ 1.04
UPF1-207ENST00000599848 HIST2H2ACQ16777 129 aaPredicted RBP21.58■■□□□ 1.04
UPF1-207ENST00000599848 HIST2H2AA3Q6FI13 130 aa21.58■■□□□ 1.04
UPF1-207ENST00000599848 SYDE1Q6ZW31 735 aaPredicted RBP21.58■■□□□ 1.04
UPF1-207ENST00000599848 NAF1Q96HR8 494 aaKnown RBP21.58■■□□□ 1.04
UPF1-207ENST00000599848 ZNF512BQ96KM6 892 aaPredicted RBP21.58■■□□□ 1.04
UPF1-207ENST00000599848 EEF1B2P24534 225 aaKnown RBP21.57■■□□□ 1.04
UPF1-207ENST00000599848 CDC42EP5Q6NZY7 148 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 STARD7Q9NQZ5 370 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 FAM187AA6NFU0 413 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 ZNF263O14978 683 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 EFTUD2Q15029 972 aaKnown RBP eCLIP21.57■■□□□ 1.044e-7■■■■■ 28.9
UPF1-207ENST00000599848 LY9Q9HBG7 655 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 MAN1C1Q9NR34 630 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 CFLARO15519 480 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 ANXA11P50995 505 aaKnown RBP21.57■■□□□ 1.04
UPF1-207ENST00000599848 DRAP1Q14919 205 aaPredicted RBP21.57■■□□□ 1.04
UPF1-207ENST00000599848 ZNF34Q8IZ26 560 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 SAAL1Q96ER3 474 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 TET3O43151 1660 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 PREX2Q70Z35 1606 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 MAPK8IP2Q13387 824 aaPredicted RBP21.57■■□□□ 1.04
UPF1-207ENST00000599848 POLD3Q15054 466 aaPredicted RBP21.57■■□□□ 1.04
UPF1-207ENST00000599848 MAP3K14Q99558 947 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 SCHIP1Q9P0W5 487 aaPredicted RBP21.57■■□□□ 1.04
UPF1-207ENST00000599848 ZMYM2Q9UBW7 1377 aa21.57■■□□□ 1.04
UPF1-207ENST00000599848 RABGAP1LQ5R372 815 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 ABHD8Q96I13 439 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 ATP1A1P05023 1023 aaKnown RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 CAPZA2P47755 286 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 VCPP55072 806 aaKnown RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 TTLL9Q3SXZ7 439 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 GRAMD1CQ8IYS0 662 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 SOCS4Q8WXH5 440 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 HINFPQ9BQA5 517 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 SUDS3Q9H7L9 328 aaPredicted RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 ATP5HO75947 161 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 RAB27AP51159 221 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 KPNA1P52294 538 aaPredicted RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 ATXN3P54252 364 aaPredicted RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 STARD3Q14849 445 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 CHSY1Q86X52 802 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 MAML1Q92585 1016 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 NMRK1Q9NWW6 199 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 SLC25A13Q9UJS0 675 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 GSG1L2A8MUP6 293 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 FAM47E-STBD1D6RA91 191 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 SRGAP2O75044 1071 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 H2AFYO75367 372 aaKnown RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 NKX1-1Q15270 411 aaPredicted RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 MB21D2Q8IYB1 491 aaPredicted RBP21.56■■□□□ 1.04
UPF1-207ENST00000599848 ARL8AQ96BM9 186 aa21.56■■□□□ 1.04
UPF1-207ENST00000599848 GRID2IPA4D2P6 1211 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 OXCT1P55809 520 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 PDCLQ13371 301 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 CCNYL1Q8N7R7 359 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 TSEN34Q9BSV6 310 aaKnown RBP21.55■■□□□ 1.04
UPF1-207ENST00000599848 KIF17Q9P2E2 1029 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 IGSF9BQ9UPX0 1349 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 PLA2R1Q13018 1463 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 CD163L1Q9NR16 1453 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 EMSYQ7Z589 1322 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 MFAP3LO75121 409 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 THPOP40225 353 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 PDAP1Q13442 181 aaKnown RBP21.55■■□□□ 1.04
UPF1-207ENST00000599848 TP53BP2Q13625 1128 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 CDH18Q13634 790 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 PDE1CQ14123 709 aaPredicted RBP21.55■■□□□ 1.04
UPF1-207ENST00000599848 RCOR2Q8IZ40 523 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 PRR12Q9ULL5 1215 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 SYT2Q8N9I0 419 aaPredicted RBP21.55■■□□□ 1.04
UPF1-207ENST00000599848 BTBD6Q96KE9 485 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 SAMSN1Q9NSI8 373 aaKnown RBP21.55■■□□□ 1.04
UPF1-207ENST00000599848 RSPH10B2B2RC85 870 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 CAND2O75155 1236 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 RSPH10BP0C881 870 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 EPHB3P54753 998 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 C16orf86Q6ZW13 317 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 SPATA17Q96L03 361 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 UVRAGQ9P2Y5 699 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 CAPN7Q9Y6W3 813 aa21.55■■□□□ 1.04
UPF1-207ENST00000599848 NCKAP1LP55160 1127 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 HPCAP84074 193 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 PDK1Q15118 436 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 EFCAB12Q6NXP0 572 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 ZNF557Q8N988 423 aaPredicted RBP21.54■■□□□ 1.04
UPF1-207ENST00000599848 TMEM260Q9NX78 707 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 CAMTA2O94983 1202 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 ARIH2O95376 493 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 LMNAP02545 664 aaKnown RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms