RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 H0Y858 1186 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 H0YCG3 227 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 CCL16O15467 120 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 CD2BP2O95400 341 aaKnown RBP10.73□□□□□ -0.69
VRK3-216ENST00000599342 CFHP08603 1231 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 PLS3P13797 630 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 FGFR3P22607 806 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 FSHRP23945 695 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 HOXA9P31269 272 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 OR1D2P34982 312 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 MATR3P43243 847 aaKnown RBP eCLIP10.73□□□□□ -0.69
VRK3-216ENST00000599342 MAPK7Q13164 816 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 NOLC1Q14978 699 aaKnown RBP eCLIP10.73□□□□□ -0.69
VRK3-216ENST00000599342 TAS1R3Q7RTX0 852 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 GRASPQ7Z6J2 395 aaPredicted RBP10.73□□□□□ -0.69
VRK3-216ENST00000599342 SIX5Q8N196 739 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 SYT2Q8N9I0 419 aaPredicted RBP10.73□□□□□ -0.69
VRK3-216ENST00000599342 RASSF8Q8NHQ8 419 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 SLC7A14Q8TBB6 771 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 SPIRE2Q8WWL2 714 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 RSAD2Q8WXG1 361 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 CALML4Q96GE6 196 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 SNX27Q96L92 541 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 AK8Q96MA6 479 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 FAM86C1Q9NVL1 165 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 MTRRQ9UBK8 725 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 CDY1Q9Y6F8 540 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 ZFP37Q9Y6Q3 630 aaPredicted RBP10.73□□□□□ -0.69
VRK3-216ENST00000599342 TRIOO75962 3097 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 STK25O00506 426 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 PODXLO00592 558 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 ADAM12O43184 909 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 NARSO43776 548 aaKnown RBP10.72□□□□□ -0.69
VRK3-216ENST00000599342 TOM1L1O75674 476 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 BMP15O95972 392 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 PLA2G4BP0C869 781 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 SRFP11831 508 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 LAMP2P13473 410 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 PROZP22891 400 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 TKTP29401 623 aaKnown RBP10.72□□□□□ -0.69
VRK3-216ENST00000599342 BRCC3P46736 316 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 SLC12A3P55017 1021 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 RAB33AQ14088 237 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 UVSSAQ2YD98 709 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 XKR4Q5GH76 650 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 AXDND1Q5T1B0 1012 aaPredicted RBP10.72□□□□□ -0.69
VRK3-216ENST00000599342 LARP1BQ659C4 914 aaKnown RBP10.72□□□□□ -0.69
VRK3-216ENST00000599342 CWF19L1Q69YN2 538 aaKnown RBP10.72□□□□□ -0.69
VRK3-216ENST00000599342 ALKAL1Q6UXT8 129 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 C3orf58Q8NDZ4 430 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 BICD1Q96G01 975 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 PNMA5Q96PV4 448 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 RTP3Q9BQQ7 232 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 NTPCRQ9BSD7 190 aaKnown RBP10.72□□□□□ -0.69
VRK3-216ENST00000599342 CNTN3Q9P232 1028 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 LARSQ9P2J5 1176 aaKnown RBP10.72□□□□□ -0.69
VRK3-216ENST00000599342 WNT16Q9UBV4 365 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 NUB1Q9Y5A7 615 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 BACE2Q9Y5Z0 518 aa10.72□□□□□ -0.69
VRK3-216ENST00000599342 I3L4J1 428 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 SYN3O14994 580 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 CLDN3O15551 220 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 SLC26A4O43511 780 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 MAPTP10636 758 aaKnown RBP10.71□□□□□ -0.69
VRK3-216ENST00000599342 KCNE1P15382 129 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 AOC1P19801 751 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 ELF1P32519 619 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 RPL9P32969 192 aaKnown RBP10.71□□□□□ -0.69
VRK3-216ENST00000599342 UBA7P41226 1012 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 CACNB1Q02641 598 aaPredicted RBP10.71□□□□□ -0.69
VRK3-216ENST00000599342 SOX4Q06945 474 aaPredicted RBP10.71□□□□□ -0.69
VRK3-216ENST00000599342 TMEM119Q4V9L6 283 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 ZPBP2Q6X784 338 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 MTSS1LQ765P7 747 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 RTL10Q7L3V2 364 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 BRAPQ7Z569 592 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 SLC44A3Q8N4M1 653 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 TMEM161BQ8NDZ6 487 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 ZMAT2Q96NC0 199 aaKnown RBP10.71□□□□□ -0.69
VRK3-216ENST00000599342 TBC1D32Q96NH3 1257 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 MYO10Q9HD67 2058 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 CDH7Q9ULB5 785 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 ODF2LQ9ULJ1 636 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 CA14Q9ULX7 337 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 NUMBLQ9Y6R0 609 aa10.71□□□□□ -0.69
VRK3-216ENST00000599342 MTCL1Q9Y4B5 1905 aaKnown RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 NPHP3-ACAD11A0A0J9YXS1 232 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 ANHXE9PGG2 379 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 H7C4K7 107 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 K7ENM7 598 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 ABLIM1O14639 778 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 PRRG1O14668 218 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 GFRA3O60609 400 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 FAM13AO94988 1023 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 LRG1P02750 347 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 KRT18P05783 430 aaKnown RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 POU2F2P09086 479 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 NPR3P17342 541 aa10.7□□□□□ -0.7
VRK3-216ENST00000599342 IGFBP6P24592 240 aaPredicted RBP10.7□□□□□ -0.7
VRK3-216ENST00000599342 MCM4P33991 863 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms