RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TOB1P50616 345 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 SNW1Q13573 536 aaKnown RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 NBR1Q14596 966 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 MLF2Q15773 248 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 EEF1DP3Q658K8 133 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 ANKS3Q6ZW76 656 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 APBB1IPQ7Z5R6 666 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 MAML2Q8IZL2 1156 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 C4orf32Q8N8J7 132 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 ST13P5Q8NFI4 369 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 ITFG1Q8TB96 612 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 TMX3Q96JJ7 454 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 UROC1Q96N76 676 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 PPP1R10Q96QC0 940 aaKnown RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 BCO2Q9BYV7 579 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 DNMT3BQ9UBC3 853 aaKnown RBP13.77□□□□□ -0.21
TRIM28-212ENST00000597995 FBXO4Q9UKT5 387 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 MYH15Q9Y2K3 1946 aa13.77□□□□□ -0.21
TRIM28-212ENST00000597995 DMXL1Q9Y485 3027 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 OR52Z1P0C646 297 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 U2AF2P26368 475 aaKnown RBP eCLIP13.76□□□□□ -0.217e-13■■■□□ 18.7
TRIM28-212ENST00000597995 PABPC1LQ4VXU2 614 aaKnown RBP13.76□□□□□ -0.21
TRIM28-212ENST00000597995 NPAS3Q8IXF0 933 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 KIAA2013Q8IYS2 634 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 FAM184AQ8NB25 1140 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 KIFAP3Q92845 792 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 RMDN1Q96DB5 314 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 IFT74Q96LB3 600 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 TBC1D32Q96NH3 1257 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 NELL2Q99435 816 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 AVENQ9NQS1 362 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-212ENST00000597995 USP20Q9Y2K6 914 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 GDAQ9Y2T3 454 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 NOTCH4Q99466 2003 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 MIA3Q5JRA6 1907 aa13.76□□□□□ -0.21
TRIM28-212ENST00000597995 FAM170BA6NMN3 283 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 LAMTOR5O43504 91 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 KINO60870 393 aaKnown RBP13.75□□□□□ -0.21
TRIM28-212ENST00000597995 LRRN2O75325 713 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 ECI2O75521 394 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 EDN1P05305 212 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 LIG1P18858 919 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 CLCNKBP51801 687 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 PUM1Q14671 1186 aaKnown RBP eCLIP13.75□□□□□ -0.21
TRIM28-212ENST00000597995 UPP1Q16831 310 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 XKR4Q5GH76 650 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 TTC38Q5R3I4 469 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 NT5DC1Q5TFE4 455 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 ATF7IP2Q5U623 682 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 HAUS3Q68CZ6 603 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 CD300LGQ6UXG3 332 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 SUMF1Q8NBK3 374 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 DDX27Q96GQ7 796 aaKnown RBP13.75□□□□□ -0.21
TRIM28-212ENST00000597995 LTB4R2Q9NPC1 389 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 SPATA6Q9NWH7 488 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-212ENST00000597995 HCFC1R1Q9NWW0 138 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 GDE1Q9NZC3 331 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 TNFSF13BQ9Y275 285 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 MRPS23Q9Y3D9 190 aaKnown RBP13.75□□□□□ -0.21
TRIM28-212ENST00000597995 CDY1Q9Y6F8 540 aa13.75□□□□□ -0.21
TRIM28-212ENST00000597995 FRYLO94915 3013 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 ARHGEF37A1IGU5 675 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 K7ERI5 159 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 SPTLC1O15269 473 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 NCAM2O15394 837 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 IGFBP6P24592 240 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-212ENST00000597995 TKTP29401 623 aaKnown RBP13.74□□□□□ -0.21
TRIM28-212ENST00000597995 UBXN2BQ14CS0 331 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 GLRA4Q5JXX5 417 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 ZBTB41Q5SVQ8 909 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 SLC8B1Q6J4K2 584 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 DGLUCYQ7Z3D6 616 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 ZNF461Q8TAF7 563 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 CLDN23Q96B33 292 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 HINFPQ9BQA5 517 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 KXD1Q9BQD3 176 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 TOPORSQ9NS56 1045 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-212ENST00000597995 SLC38A7Q9NVC3 462 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 MTF2Q9Y483 593 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-212ENST00000597995 PCDHB6Q9Y5E3 794 aa13.74□□□□□ -0.21
TRIM28-212ENST00000597995 TRIP11Q15643 1979 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 SMIM28A0A1B0GU29 152 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 MICAL2O94851 1124 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 ABLIM3O94929 683 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 RHOP08100 348 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 PTPN2P17706 415 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 ELF1P32519 619 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 GRM5P41594 1212 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 RPS9P46781 194 aaKnown RBP13.73□□□□□ -0.21
TRIM28-212ENST00000597995 TRAPPC10P48553 1259 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 FXR2P51116 673 aaKnown RBP eCLIP13.73□□□□□ -0.217e-12■■■□□ 19.2
TRIM28-212ENST00000597995 YARSP54577 528 aaKnown RBP13.73□□□□□ -0.21
TRIM28-212ENST00000597995 ECM1Q16610 540 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 ALKAL1Q6UXT8 129 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 C3orf58Q8NDZ4 430 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 KIFC3Q9BVG8 833 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 CCDC94Q9BW85 323 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-212ENST00000597995 BHMT2Q9H2M3 363 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 DLL3Q9NYJ7 618 aa13.73□□□□□ -0.21
TRIM28-212ENST00000597995 MRPS17Q9Y2R5 130 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms