RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ARHGAP28Q9P2N2 729 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 PCDHB6Q9Y5E3 794 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 BACE2Q9Y5Z0 518 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 DOCK6Q96HP0 2047 aa26.27■■□□□ 1.8
LSM4-202ENST00000593564 SMIM28A0A1B0GU29 152 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 E9PMD0 336 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 LAD1O00515 517 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 DMP1Q13316 513 aaPredicted RBP26.26■■□□□ 1.79
LSM4-202ENST00000593564 XKR4Q5GH76 650 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 KRT79Q5XKE5 535 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 PARM1Q6UWI2 310 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 ALKAL1Q6UXT8 129 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 ANKS3Q6ZW76 656 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 DAW1Q8N136 415 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 CEP120Q8N960 986 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 FGF14Q92915 247 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 CCDC94Q9BW85 323 aaPredicted RBP26.26■■□□□ 1.79
LSM4-202ENST00000593564 MRPL4Q9BYD3 311 aaKnown RBP26.26■■□□□ 1.79
LSM4-202ENST00000593564 GOLGA2P5Q9HBQ8 144 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 POLIQ9UNA4 740 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 CDY1Q9Y6F8 540 aa26.26■■□□□ 1.79
LSM4-202ENST00000593564 HIP1RO75146 1068 aa26.25■■□□□ 1.79
LSM4-202ENST00000593564 PRPHP41219 470 aa26.25■■□□□ 1.79
LSM4-202ENST00000593564 YARSP54577 528 aaKnown RBP26.25■■□□□ 1.79
LSM4-202ENST00000593564 ZNF568Q3ZCX4 644 aa26.25■■□□□ 1.79
LSM4-202ENST00000593564 RSPO2Q6UXX9 243 aaPredicted RBP26.25■■□□□ 1.79
LSM4-202ENST00000593564 C3orf58Q8NDZ4 430 aa26.25■■□□□ 1.79
LSM4-202ENST00000593564 ST13P5Q8NFI4 369 aaPredicted RBP26.25■■□□□ 1.79
LSM4-202ENST00000593564 FGF13Q92913 245 aa26.25■■□□□ 1.79
LSM4-202ENST00000593564 DDX27Q96GQ7 796 aaKnown RBP26.25■■□□□ 1.79
LSM4-202ENST00000593564 DRC1Q96MC2 740 aa26.25■■□□□ 1.79
LSM4-202ENST00000593564 RPP25Q9BUL9 199 aaKnown RBP26.25■■□□□ 1.79
LSM4-202ENST00000593564 GVINP1Q7Z2Y8 2422 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 PP2D1A8MPX8 630 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 TKTP29401 623 aaKnown RBP26.24■■□□□ 1.79
LSM4-202ENST00000593564 SOX4Q06945 474 aaPredicted RBP26.24■■□□□ 1.79
LSM4-202ENST00000593564 MTSS1LQ765P7 747 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 TAS1R3Q7RTX0 852 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 RUSC1Q9BVN2 902 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 C17orf75Q9HAS0 396 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 KMT5AQ9NQR1 393 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 SLC38A7Q9NVC3 462 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 KCNH3Q9ULD8 1083 aa26.24■■□□□ 1.79
LSM4-202ENST00000593564 RBM19Q9Y4C8 960 aaKnown RBP26.24■■□□□ 1.79
LSM4-202ENST00000593564 PROZP22891 400 aa26.23■■□□□ 1.79
LSM4-202ENST00000593564 MAPK7Q13164 816 aa26.23■■□□□ 1.79
LSM4-202ENST00000593564 IL17AQ16552 155 aa26.23■■□□□ 1.79
LSM4-202ENST00000593564 RINT1Q6NUQ1 792 aa26.23■■□□□ 1.79
LSM4-202ENST00000593564 C1orf186Q6ZWK4 172 aa26.23■■□□□ 1.79
LSM4-202ENST00000593564 ITFG1Q8TB96 612 aa26.23■■□□□ 1.79
LSM4-202ENST00000593564 TARS2Q9BW92 718 aaKnown RBP26.23■■□□□ 1.79
LSM4-202ENST00000593564 SPTBN4Q9H254 2564 aa26.23■■□□□ 1.79
LSM4-202ENST00000593564 I3L4J1 428 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 MCF2P10911 925 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 BRCC3P46736 316 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 OSTNP61366 133 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 GPC5P78333 572 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 PABPC1LQ4VXU2 614 aaKnown RBP26.22■■□□□ 1.79
LSM4-202ENST00000593564 DTHD1Q6ZMT9 781 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 SNX27Q96L92 541 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 MMTAG2Q9BU76 263 aaKnown RBP26.22■■□□□ 1.79
LSM4-202ENST00000593564 TIPINQ9BVW5 301 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 EIF4ENIF1Q9NRA8 985 aaKnown RBP26.22■■□□□ 1.79
LSM4-202ENST00000593564 DLGAP2Q9P1A6 1054 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 DNMT3BQ9UBC3 853 aaKnown RBP26.22■■□□□ 1.79
LSM4-202ENST00000593564 SIT1Q9Y3P8 196 aa26.22■■□□□ 1.79
LSM4-202ENST00000593564 TRIP11Q15643 1979 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 ABLIM1O14639 778 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 KCNE1P15382 129 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 CDC25AP30304 524 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 STARD6P59095 220 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 SLC8B1Q6J4K2 584 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 MPZL3Q6UWV2 235 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 KCNK18Q7Z418 384 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 SHDQ96IW2 340 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 ZMAT2Q96NC0 199 aaKnown RBP26.21■■□□□ 1.79
LSM4-202ENST00000593564 ACAP3Q96P50 834 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 HCFC1R1Q9NWW0 138 aa26.21■■□□□ 1.79
LSM4-202ENST00000593564 PODXLO00592 558 aa26.2■■□□□ 1.78
LSM4-202ENST00000593564 DCNP07585 359 aaKnown RBP26.2■■□□□ 1.78
LSM4-202ENST00000593564 GUCY2CP25092 1073 aa26.2■■□□□ 1.78
LSM4-202ENST00000593564 NPAS3Q8IXF0 933 aa26.2■■□□□ 1.78
LSM4-202ENST00000593564 ADSSL1Q8N142 457 aa26.2■■□□□ 1.78
LSM4-202ENST00000593564 NTPCRQ9BSD7 190 aaKnown RBP26.2■■□□□ 1.78
LSM4-202ENST00000593564 CNTN3Q9P232 1028 aa26.2■■□□□ 1.78
LSM4-202ENST00000593564 SYN3O14994 580 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 SLC16A4O15374 487 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 ROR1Q01973 937 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 SPECC1Q5M775 1068 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 VARS2Q5ST30 1063 aaKnown RBP26.19■■□□□ 1.78
LSM4-202ENST00000593564 PJA1Q8NG27 643 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 ZNF461Q8TAF7 563 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 SPIRE2Q8WWL2 714 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 TCHPQ9BT92 498 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 SEMA4AQ9H3S1 761 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 AVENQ9NQS1 362 aaPredicted RBP26.19■■□□□ 1.78
LSM4-202ENST00000593564 KIF3AQ9Y496 699 aa26.19■■□□□ 1.78
LSM4-202ENST00000593564 ARHGEF37A1IGU5 675 aa26.18■■□□□ 1.78
LSM4-202ENST00000593564 TBC1D4O60343 1298 aa26.18■■□□□ 1.78
LSM4-202ENST00000593564 RPL9P32969 192 aaKnown RBP26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms