RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 JADE1Q6IE81 842 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 FAM117BQ6P1L5 589 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 NT5DC4Q86YG4 428 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 WDR49Q8IV35 697 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 TRIM59Q8IWR1 403 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 ANKRD20A12PQ8NF67 263 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 KIF12Q96FN5 646 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 ZMAT2Q96NC0 199 aaKnown RBP16.45■□□□□ 0.22
ATG4D-211ENST00000589753 CASD1Q96PB1 797 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 POP1Q99575 1024 aaKnown RBP16.45■□□□□ 0.22
ATG4D-211ENST00000589753 MIOSQ9NXC5 875 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 KANSL3Q9P2N6 904 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 C2CD2Q9Y426 696 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 CITO14578 2027 aa16.45■□□□□ 0.22
ATG4D-211ENST00000589753 ANK1P16157 1881 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 TBKBP1A7MCY6 615 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 STX10O60499 249 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 GJB5O95377 273 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 THP07101 528 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 TRIM49P0CI25 452 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 TRIM49CP0CI26 452 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 ATP1A3P13637 1013 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 CLDN10P78369 228 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 TFAMQ00059 246 aaKnown RBP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 GRIK3Q13003 919 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 LMBRD2Q68DH5 695 aaPredicted RBP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 HERC6Q8IVU3 1022 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 EFCAB13Q8IY85 973 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 CACTINQ8WUQ7 758 aaKnown RBP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 SLC35C1Q96A29 364 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 ZNF689Q96CS4 500 aaPredicted RBP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 PPP1R10Q96QC0 940 aaKnown RBP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 TUBGCP2Q9BSJ2 902 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 ZBED2Q9BTP6 218 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 MRPL9Q9BYD2 267 aaKnown RBP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 INTS13Q9NVM9 706 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 UBQLN1Q9UMX0 589 aaKnown RBP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.44■□□□□ 0.22
ATG4D-211ENST00000589753 PTPRSQ13332 1948 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 PTPRJQ12913 1337 aa16.44■□□□□ 0.22
ATG4D-211ENST00000589753 XPOTO43592 962 aaKnown RBP16.43■□□□□ 0.22
ATG4D-211ENST00000589753 TMEM191BP0C7N4 346 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 PRKCSHP14314 528 aaPredicted RBP16.43■□□□□ 0.22
ATG4D-211ENST00000589753 AP3M2P53677 418 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 KRT31Q15323 416 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 ZBTB6Q15916 424 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 MAN2A1Q16706 1144 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 DUOXA2Q1HG44 320 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 PAN2Q504Q3 1202 aaKnown RBP16.43■□□□□ 0.22
ATG4D-211ENST00000589753 C1orf220Q5T0J3 134 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 BEST2Q8NFU1 509 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 ANKRD36BP1Q96IX9 119 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 YME1L1Q96TA2 773 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 RC3H2Q9HBD1 1191 aaKnown RBP16.43■□□□□ 0.22
ATG4D-211ENST00000589753 SLC38A7Q9NVC3 462 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 TBC1D13Q9NVG8 400 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 LIMA1Q9UHB6 759 aaKnown RBP16.43■□□□□ 0.22
ATG4D-211ENST00000589753 PLAGL2Q9UPG8 496 aa16.43■□□□□ 0.22
ATG4D-211ENST00000589753 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.43■□□□□ 0.22
ATG4D-211ENST00000589753 TNNC2P02585 160 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 TPM2P07951 284 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 CYP3A5P20815 502 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 GTF2H1P32780 548 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 HTRA4P83105 476 aaPredicted RBP16.42■□□□□ 0.22
ATG4D-211ENST00000589753 RNASELQ05823 741 aaKnown RBP16.42■□□□□ 0.22
ATG4D-211ENST00000589753 PPP3CAQ08209 521 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 KCNH2Q12809 1159 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 CMTR2Q8IYT2 770 aaKnown RBP16.42■□□□□ 0.22
ATG4D-211ENST00000589753 LRRC43Q8N309 656 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 OR5B17Q8NGF7 314 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 ZNF516Q92618 1163 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 C18orf25Q96B23 403 aaPredicted RBP16.42■□□□□ 0.22
ATG4D-211ENST00000589753 FAM193BQ96PV7 902 aaPredicted RBP16.42■□□□□ 0.22
ATG4D-211ENST00000589753 MTMR12Q9C0I1 747 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 MMRN2Q9H8L6 949 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 TAB2Q9NYJ8 693 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 TUBGCP4Q9UGJ1 667 aa16.42■□□□□ 0.22
ATG4D-211ENST00000589753 PDCD11Q14690 1871 aaKnown RBP16.42■□□□□ 0.22
ATG4D-211ENST00000589753 COL4A6Q14031 1691 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 LRRC10BA6NIK2 292 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 AFPP02771 609 aaKnown RBP16.41■□□□□ 0.22
ATG4D-211ENST00000589753 GCLMP48507 274 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 TUSC3Q13454 348 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 BTG3Q14201 252 aaPredicted RBP16.41■□□□□ 0.22
ATG4D-211ENST00000589753 NAB2Q15742 525 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 VWA3BQ502W6 1294 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 FAM84AQ96KN4 292 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 RAD9AQ99638 391 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 VPS16Q9H269 839 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 TMEM8AQ9HCN3 771 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 DPP3Q9NY33 737 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 INSL6Q9Y581 213 aa16.41■□□□□ 0.22
ATG4D-211ENST00000589753 FNDC1Q4ZHG4 1894 aaPredicted RBP16.41■□□□□ 0.22
ATG4D-211ENST00000589753 TRIP11Q15643 1979 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 TLL1O43897 1013 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 N4BP1O75113 896 aaKnown RBP16.4■□□□□ 0.22
ATG4D-211ENST00000589753 PHACTR2O75167 634 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 DDHD2O94830 711 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 SERPINC1P01008 464 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 C4BPAP04003 597 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms