RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CHRNA3P32297 505 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 PBX2P40425 430 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 PDE6CP51160 858 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 DRG2P55039 364 aaKnown RBP7.95□□□□□ -1.14
ZNF540-206ENST00000589117 RTP1P59025 263 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 BPIFB4P59827 614 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 ERVK-9P63128 1117 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 PPP3CAQ08209 521 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 IFFO1Q0D2I5 559 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 FAM26DQ5JW98 314 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 MICALCLQ6ZW33 695 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 VSIG10LQ86VR7 867 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 MAP4K3Q8IVH8 894 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 FBXL13Q8NEE6 735 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 IL31RAQ8NI17 732 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 POMGNT1Q8WZA1 660 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 SEC14L1Q92503 715 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 CEP170P1Q96L14 293 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 FMO2Q99518 471 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.95□□□□□ -1.14
ZNF540-206ENST00000589117 UVRAGQ9P2Y5 699 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 PSME4Q14997 1843 aa7.95□□□□□ -1.14
ZNF540-206ENST00000589117 ASTN2O75129 1339 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 DENND3A2RUS2 1198 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 ZNF233A6NK53 670 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 SRRM3A6NNA2 597 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 C19orf81C9J6K1 198 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 MYO1CO00159 1063 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 BACH1O14867 736 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TREHO43280 583 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 ZEB2O60315 1214 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 ZC3H11AO75152 810 aaKnown RBP eCLIP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 IGHA2P01877 340 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 NR3C2P08235 984 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 HSD17B3P37058 310 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 NPTX2P47972 431 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 GPC3P51654 580 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 BACE1P56817 501 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 ZNF280AP59817 542 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 DLG4P78352 724 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 DALRD3Q5D0E6 543 aaKnown RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 WDR44Q5JSH3 913 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 KCTD16Q68DU8 428 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 ZNF687Q8N1G0 1237 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TMEM161BQ8NDZ6 487 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 PARD3BQ8TEW8 1205 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 UBLCP1Q8WVY7 318 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 MAIP1Q8WWC4 291 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 ARL8AQ96BM9 186 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TRIM11Q96F44 468 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 BICD1Q96G01 975 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 ERP44Q9BS26 406 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 FAM129AQ9BZQ8 928 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TMEM117Q9H0C3 514 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 CENPHQ9H3R5 247 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 PLEKHA4Q9H4M7 779 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 MTRF1LQ9UGC7 380 aaKnown RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TSR3Q9UJK0 312 aaKnown RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 COQ4Q9Y3A0 265 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 NDUFAB1O14561 156 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TTI1O43156 1089 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 DAPK3O43293 454 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 SPOPO43791 374 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 MTA2O94776 668 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 GARTP22102 1010 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 MAP2K1Q02750 393 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 USP4Q13107 963 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 PTPROQ16827 1216 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TTMPQ5BVD1 217 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TBCELQ5QJ74 424 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 PPP1R2P3Q6NXS1 205 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 MAMSTRQ6ZN01 415 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 TRMT1LQ7Z2T5 733 aaKnown RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 HOOK3Q86VS8 718 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 DNAAF5Q86Y56 855 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 CDAN1Q8IWY9 1227 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 SCG3Q8WXD2 468 aaKnown RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 PPM1EQ8WY54 764 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 PIK3R5Q8WYR1 880 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 SHC3Q92529 594 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 CCDC127Q96BQ5 260 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 SLC10A4Q96EP9 437 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 RNF146Q9NTX7 359 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 RAB20Q9NX57 234 aa7.94□□□□□ -1.14
ZNF540-206ENST00000589117 FEZ2Q9UHY8 353 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.94□□□□□ -1.14
ZNF540-206ENST00000589117 IGSF9BQ9UPX0 1349 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 HNRNPDLO14979 420 aaKnown RBP7.93□□□□□ -1.14
ZNF540-206ENST00000589117 DDX3YO15523 660 aaKnown RBP7.93□□□□□ -1.14
ZNF540-206ENST00000589117 KIAA0754O94854 1291 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 ZBTB48P10074 688 aaPredicted RBP7.93□□□□□ -1.14
ZNF540-206ENST00000589117 KCNA3P22001 575 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 MAPK8P45983 427 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 BAG6P46379 1132 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 CDR2Q01850 454 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 DHX9Q08211 1270 aaKnown RBP7.93□□□□□ -1.14
ZNF540-206ENST00000589117 STRN3Q13033 797 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 SPP2Q13103 211 aa7.93□□□□□ -1.14
ZNF540-206ENST00000589117 BAATQ14032 418 aaPredicted RBP7.93□□□□□ -1.14
ZNF540-206ENST00000589117 MESDQ14696 234 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms