RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DSC1Q08554 894 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 TUSC3Q13454 348 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 SNRNP35Q16560 246 aaKnown RBP16.84■□□□□ 0.29
SS18-216ENST00000580751 GLRA4Q5JXX5 417 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 CRELD2Q6UXH1 353 aaPredicted RBP16.84■□□□□ 0.29
SS18-216ENST00000580751 LUZP1Q86V48 1076 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 BRSK2Q8IWQ3 736 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 AOPEPQ8N6M6 819 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 ZNF558Q96NG5 402 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 TMEM175Q9BSA9 504 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 PLVAPQ9BX97 442 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 SEMA6BQ9H3T3 888 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 ZNF576Q9H609 170 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 MIOSQ9NXC5 875 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 PLAGL2Q9UPG8 496 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 PCDHB12Q9Y5F1 795 aa16.84■□□□□ 0.29
SS18-216ENST00000580751 MEFVO15553 781 aaPredicted RBP16.83■□□□□ 0.28
SS18-216ENST00000580751 XPOTO43592 962 aaKnown RBP16.83■□□□□ 0.28
SS18-216ENST00000580751 RB1P06400 928 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 PRKCSHP14314 528 aaPredicted RBP16.83■□□□□ 0.28
SS18-216ENST00000580751 NR2F2P24468 414 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 BMPR1AP36894 532 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 ALDH7A1P49419 539 aaKnown RBP16.83■□□□□ 0.28
SS18-216ENST00000580751 FXR1P51114 621 aaKnown RBP eCLIP16.83■□□□□ 0.28
SS18-216ENST00000580751 SPAG1Q07617 926 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 KLHL10Q6JEL2 608 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 TTI2Q6NXR4 508 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 NLRC5Q86WI3 1866 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 ZNF280BQ86YH2 543 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 COLGALT1Q8NBJ5 622 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 ANP32BQ92688 251 aaKnown RBP16.83■□□□□ 0.28
SS18-216ENST00000580751 FAM212AQ96EL1 285 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 PPP1R10Q96QC0 940 aaKnown RBP16.83■□□□□ 0.28
SS18-216ENST00000580751 C17orf80Q9BSJ5 609 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 C11orf84Q9BUA3 381 aaPredicted RBP16.83■□□□□ 0.28
SS18-216ENST00000580751 KIAA1671Q9BY89 1806 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 THAP9Q9H5L6 903 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 NRDE2Q9H7Z3 1164 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 DMAC2Q9NW81 257 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 HCSTQ9UBK5 93 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 MTUS1Q9ULD2 1270 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 CTNND2Q9UQB3 1225 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 DERAQ9Y315 318 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 NFE2L3Q9Y4A8 694 aa16.83■□□□□ 0.28
SS18-216ENST00000580751 LACTBL1A8MY62 500 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 C5orf67F2Z3F1 127 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 DDHD2O94830 711 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 BCAR1P56945 870 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 SURF1Q15526 300 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 TPD52L1Q16890 204 aaPredicted RBP16.82■□□□□ 0.28
SS18-216ENST00000580751 EPC2Q52LR7 807 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 SARM1Q6SZW1 724 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 KCNT2Q6UVM3 1135 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 NT5DC4Q86YG4 428 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 CBWD2Q8IUF1 395 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 FAM114A1Q8IWE2 563 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 COLGALT2Q8IYK4 626 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 ZSWIM2Q8NEG5 633 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 FBXO22Q8NEZ5 403 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 ARNTL2Q8WYA1 636 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 KIF12Q96FN5 646 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 CEP63Q96MT8 703 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 UROC1Q96N76 676 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 CXCL16Q9H2A7 254 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 UBQLN1Q9UMX0 589 aaKnown RBP16.82■□□□□ 0.28
SS18-216ENST00000580751 FRMD4BQ9Y2L6 1034 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 C2CD2Q9Y426 696 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 TRANK1O15050 2925 aa16.82■□□□□ 0.28
SS18-216ENST00000580751 PDCD11Q14690 1871 aaKnown RBP16.82■□□□□ 0.28
SS18-216ENST00000580751 TRIP11Q15643 1979 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 B4GALT3O60512 393 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 GNA14O95837 355 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 ZNF18P17022 549 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 FKBP3Q00688 224 aaKnown RBP16.81■□□□□ 0.28
SS18-216ENST00000580751 ADAM9Q13443 819 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 TMEM132DQ14C87 1099 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 NAB2Q15742 525 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 ZMAT2Q96NC0 199 aaKnown RBP16.81■□□□□ 0.28
SS18-216ENST00000580751 MED15Q96RN5 788 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 TTYH1Q9H313 450 aaPredicted RBP16.81■□□□□ 0.28
SS18-216ENST00000580751 DNAJB4Q9UDY4 337 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 CDH23Q9H251 3354 aa16.81■□□□□ 0.28
SS18-216ENST00000580751 SZT2Q5T011 3432 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 CETN3O15182 167 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 MAPK13O15264 365 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 ALDH2P05091 517 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 GALTP07902 379 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 CYP3A5P20815 502 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 EEF1GP26641 437 aaKnown RBP16.8■□□□□ 0.28
SS18-216ENST00000580751 OR1G1P47890 313 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 SLC11A1P49279 550 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 CYP24A1Q07973 514 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 CDKAL1Q5VV42 579 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 CEP135Q66GS9 1140 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 ANKRD40Q6AI12 368 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 JADE1Q6IE81 842 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 SPRED2Q7Z698 418 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 USP37Q86T82 979 aa16.8■□□□□ 0.28
SS18-216ENST00000580751 ZC3H3Q8IXZ2 948 aaKnown RBP16.8■□□□□ 0.28
SS18-216ENST00000580751 SLC39A11Q8N1S5 342 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms