RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 LPXNO60711 386 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 FOSP01100 380 aaPredicted RBP10.54□□□□□ -0.72
CIITA-208ENST00000572665 TCF7P36402 384 aaPredicted RBP10.54□□□□□ -0.72
CIITA-208ENST00000572665 USP11P51784 963 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 SP4Q02446 784 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 NKG7Q16617 165 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 SLC35G1Q2M3R5 365 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 TIGD5Q53EQ6 642 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 CDPF1Q6NVV7 123 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 RPAINQ86UA6 219 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 NLRC5Q86WI3 1866 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 MCATQ8IVS2 390 aaKnown RBP10.54□□□□□ -0.72
CIITA-208ENST00000572665 MRPL41Q8IXM3 137 aaKnown RBP10.54□□□□□ -0.72
CIITA-208ENST00000572665 ARMC10Q8N2F6 343 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 ZNF713Q8N859 430 aaPredicted RBP10.54□□□□□ -0.72
CIITA-208ENST00000572665 FANCBQ8NB91 859 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 GDPD5Q8WTR4 605 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 GLG1Q92896 1179 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 MYRFLQ96LU7 910 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 MYL10Q9BUA6 226 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 IFIH1Q9BYX4 1025 aaKnown RBP10.54□□□□□ -0.72
CIITA-208ENST00000572665 AZI2Q9H6S1 392 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 FAM50BQ9Y247 325 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 COL4A6Q14031 1691 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 C1QTNF9BB2RNN3 333 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 SLC27A2O14975 620 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 SMAD7O15105 426 aaKnown RBP10.53□□□□□ -0.72
CIITA-208ENST00000572665 NCK2O43639 380 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 PLEKHA8P1O95397 391 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 KCNQ1P51787 676 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 PPFIA1Q13136 1202 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 SLBPQ14493 270 aaKnown RBP eCLIP10.53□□□□□ -0.72
CIITA-208ENST00000572665 KRT32Q14532 448 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 SGO2Q562F6 1265 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 CREB3L3Q68CJ9 461 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 SLC6A19Q695T7 634 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.53□□□□□ -0.72
CIITA-208ENST00000572665 ANKS3Q6ZW76 656 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 HEATR3Q7Z4Q2 680 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 TMCO2Q7Z6W1 182 aaPredicted RBP10.53□□□□□ -0.72
CIITA-208ENST00000572665 SGMS1Q86VZ5 419 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 CKAP2LQ8IYA6 745 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 SRBD1Q8N5C6 995 aaKnown RBP10.53□□□□□ -0.72
CIITA-208ENST00000572665 LMBR1Q8WVP7 490 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 UTP4Q969X6 686 aaKnown RBP10.53□□□□□ -0.72
CIITA-208ENST00000572665 SDF4Q9BRK5 362 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 LSG1Q9H089 658 aaKnown RBP10.53□□□□□ -0.72
CIITA-208ENST00000572665 TUBE1Q9UJT0 475 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 PCOLCE2Q9UKZ9 415 aa10.53□□□□□ -0.72
CIITA-208ENST00000572665 CHURC1-FNTBB4DL54 471 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 RB1P06400 928 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 HMGB1P09429 215 aaKnown RBP10.52□□□□□ -0.73
CIITA-208ENST00000572665 KCNA2P16389 499 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 SLC26A2P50443 739 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 NAPAP54920 295 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 ADAM17P78536 824 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 NECTIN1Q15223 517 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 EPC2Q52LR7 807 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 CDCP2Q5VXM1 449 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 KRT40Q6A162 431 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 MCTP2Q6DN12 878 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 RUFY4Q6ZNE9 571 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 TMTC3Q6ZXV5 915 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 MICU3Q86XE3 530 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 FIBCD1Q8N539 461 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 FAM13CQ8NE31 585 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 FBLIM1Q8WUP2 373 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 EZH1Q92800 747 aaPredicted RBP10.52□□□□□ -0.73
CIITA-208ENST00000572665 MRPL38Q96DV4 380 aaKnown RBP10.52□□□□□ -0.73
CIITA-208ENST00000572665 IL17RAQ96F46 866 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 NEK1Q96PY6 1258 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 TM9SF2Q99805 663 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 SSBP4Q9BWG4 385 aaPredicted RBP10.52□□□□□ -0.73
CIITA-208ENST00000572665 YIPF2Q9BWQ6 316 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 FTHL17Q9BXU8 183 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 SEMA6CQ9H3T2 930 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 UBE2ZQ9H832 354 aaPredicted RBP10.52□□□□□ -0.73
CIITA-208ENST00000572665 SSU72Q9NP77 194 aaKnown RBP10.52□□□□□ -0.73
CIITA-208ENST00000572665 JADE2Q9NQC1 790 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 PCDHA6Q9UN73 950 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 PCDHA8Q9Y5H6 950 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 UBIAD1Q9Y5Z9 338 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 TAF6LQ9Y6J9 622 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 SQORQ9Y6N5 450 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 CHD9Q3L8U1 2897 aa10.52□□□□□ -0.73
CIITA-208ENST00000572665 CCDC196A0A1B0GTZ2 297 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 UPK3BL1B0FP48 263 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 UPK3BL2E5RIL1 263 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 H3BNC9 293 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 ZBTB43O43298 467 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 ITGB5P18084 799 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 RXRAP19793 462 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 YARSP54577 528 aaKnown RBP10.51□□□□□ -0.73
CIITA-208ENST00000572665 IRX6P78412 446 aaPredicted RBP10.51□□□□□ -0.73
CIITA-208ENST00000572665 KCNMA1Q12791 1236 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 GPM6BQ13491 265 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 ARSHQ5FYA8 562 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 BMP2KLQ5H9B9 411 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 ODR4Q5SWX8 454 aa10.51□□□□□ -0.73
CIITA-208ENST00000572665 NLRC3Q7RTR2 1065 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms