RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 TTPALQ9BTX7 342 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 PHF7Q9BWX1 381 aaPredicted RBP21.98■■□□□ 1.11
NUP88-204ENST00000572290 TNMDQ9H2S6 317 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 ADAM7Q9H2U9 754 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 PLEKHA5Q9HAU0 1116 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 FAM13BQ9NYF5 915 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 ZDHHC9Q9Y397 364 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 BRWD1Q9NSI6 2320 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 TTC28Q96AY4 2481 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 TCF20Q9UGU0 1960 aaKnown RBP21.98■■□□□ 1.11
NUP88-204ENST00000572290 CUL9Q8IWT3 2517 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 A0A0B4J269 797 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 FRMD3A2A2Y4 597 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 OGTO15294 1046 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 CXCL8P10145 99 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 CREMQ03060 361 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 CBX2Q14781 532 aaPredicted RBP21.97■■□□□ 1.11
NUP88-204ENST00000572290 RARS2Q5T160 578 aaKnown RBP21.97■■□□□ 1.11
NUP88-204ENST00000572290 SLC39A4Q6P5W5 647 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 CEP57Q86XR8 500 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 C12orf76Q8N812 135 aaPredicted RBP21.97■■□□□ 1.11
NUP88-204ENST00000572290 MSTO1Q9BUK6 570 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 OLFML3Q9NRN5 406 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 PANK4Q9NVE7 773 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 KBTBD4Q9NVX7 518 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 TBC1D7Q9P0N9 293 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 FNIP2Q9P278 1114 aa21.97■■□□□ 1.11
NUP88-204ENST00000572290 SPDYE4A6NLX3 237 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 ANKRD63C9JTQ0 380 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 PODXLO00592 558 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 PPP1R37O75864 691 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 GLUD1P00367 558 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 IGFBP6P24592 240 aaPredicted RBP21.96■■□□□ 1.11
NUP88-204ENST00000572290 TNFSF9P41273 254 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 AMPD3Q01432 767 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 PRSS55Q6UWB4 352 aaPredicted RBP21.96■■□□□ 1.11
NUP88-204ENST00000572290 CCDC65Q8IXS2 484 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 C18orf25Q96B23 403 aaPredicted RBP21.96■■□□□ 1.11
NUP88-204ENST00000572290 STRA6Q9BX79 667 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 SFXN1Q9H9B4 322 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 DPP7Q9UHL4 492 aa21.96■■□□□ 1.11
NUP88-204ENST00000572290 MUC3AQ02505 3323 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 TTC26A0AVF1 554 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 TRAPPC3O43617 180 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 FAM189A1O60320 539 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 GCNT3O95395 438 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 RPL9P32969 192 aaKnown RBP21.95■■□□□ 1.1
NUP88-204ENST00000572290 PPP2R3AQ06190 1150 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 ZBTB41Q5SVQ8 909 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 RESP18Q5W5W9 173 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 SLFN12LQ6IEE8 588 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 CD300LGQ6UXG3 332 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.95■■□□□ 1.1
NUP88-204ENST00000572290 C3orf58Q8NDZ4 430 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 PIK3R5Q8WYR1 880 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 KHSRPQ92945 711 aaKnown RBP eCLIP21.95■■□□□ 1.1
NUP88-204ENST00000572290 RIPOR3Q96MK2 946 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 NECTIN4Q96NY8 510 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 RPF1Q9H9Y2 349 aaKnown RBP21.95■■□□□ 1.1
NUP88-204ENST00000572290 EXOC7Q9UPT5 735 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 PCDHB13Q9Y5F0 798 aa21.95■■□□□ 1.1
NUP88-204ENST00000572290 TISP43B9A030 160 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 POLR2DO15514 142 aaKnown RBP21.94■■□□□ 1.1
NUP88-204ENST00000572290 C1RP00736 705 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 RPL17P18621 184 aaKnown RBP21.94■■□□□ 1.1
NUP88-204ENST00000572290 MTHFRP42898 656 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 KRT85P78386 507 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 ALCAMQ13740 583 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 ENOX2Q16206 610 aaKnown RBP21.94■■□□□ 1.1
NUP88-204ENST00000572290 PSMD5Q16401 504 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 L1TD1Q5T7N2 865 aaKnown RBP21.94■■□□□ 1.1
NUP88-204ENST00000572290 ADALQ6DHV7 355 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 KANK3Q6NY19 840 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 PDXDC1Q6P996 788 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 ELMSAN1Q6PJG2 1045 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 TMC5Q6UXY8 1006 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 PALB2Q86YC2 1186 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 GLYCTKQ8IVS8 523 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 LNX1Q8TBB1 728 aaPredicted RBP21.94■■□□□ 1.1
NUP88-204ENST00000572290 RPGRIP1Q96KN7 1286 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 ACCSQ96QU6 501 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 TRIM9Q9C026 710 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 MAGEF1Q9HAY2 307 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 MAN1C1Q9NR34 630 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 CDH22Q9UJ99 828 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 CPSF3Q9UKF6 684 aaKnown RBP21.94■■□□□ 1.1
NUP88-204ENST00000572290 STYXL1Q9Y6J8 313 aa21.94■■□□□ 1.1
NUP88-204ENST00000572290 LACTBL1A8MY62 500 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 LOC730098B7Z3J9 87 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 MYBP10242 640 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 FGFR3P22607 806 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 BRCC3P46736 316 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 SPAG1Q07617 926 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 ATAT1Q5SQI0 421 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 KIF12Q96FN5 646 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 IKZF4Q9H2S9 585 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 EPHX3Q9H6B9 360 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 TUBGCP4Q9UGJ1 667 aa21.93■■□□□ 1.1
NUP88-204ENST00000572290 UBQLN1Q9UMX0 589 aaKnown RBP21.93■■□□□ 1.1
NUP88-204ENST00000572290 ATP6V1DQ9Y5K8 247 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms