RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TMEM143Q96AN5 459 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 ADAM33Q9BZ11 813 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 CARD9Q9H257 536 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 FAM47DPA6NHR8 397 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 RNF139Q8WU17 664 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 ARL8AQ96BM9 186 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 SGSM3Q96HU1 749 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 MCEEQ96PE7 176 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 FAM118BQ9BPY3 351 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 CHORDC1Q9UHD1 332 aaPredicted RBP16.23■□□□□ 0.19
CIITA-204ENST00000570546 WDR46O15213 610 aaKnown RBP16.22■□□□□ 0.19
CIITA-204ENST00000570546 MTMR2Q13614 643 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 TMCO4Q5TGY1 634 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 TTC39CQ8N584 583 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 DHX35Q9H5Z1 703 aaKnown RBP16.22■□□□□ 0.19
CIITA-204ENST00000570546 CCT8L1PA6NM43 557 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 XKR3Q5GH77 459 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 MDM1Q8TC05 714 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 SKA2Q8WVK7 121 aaPredicted RBP16.22■□□□□ 0.19
CIITA-204ENST00000570546 PSMC3IPQ9P2W1 217 aaPredicted RBP16.22■□□□□ 0.19
CIITA-204ENST00000570546 RSPH10B2B2RC85 870 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 CCDC22O60826 627 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 DIAPH2O60879 1101 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 RSPH10BP0C881 870 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 AP1B1Q10567 949 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 KYNUQ16719 465 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 C4orf33Q8N1A6 199 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 YIPF3Q9GZM5 350 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 CPSF3Q9UKF6 684 aaKnown RBP16.22■□□□□ 0.19
CIITA-204ENST00000570546 HUS1O60921 280 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 PRKCBP05771 671 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 EPHB1P54762 984 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 CENPCQ03188 943 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 SLC12A1Q13621 1099 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 NCOA4Q13772 614 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 ZSWIM1Q9BR11 485 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 VCPKMTQ9H867 229 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 TRIM33Q9UPN9 1127 aa16.22■□□□□ 0.19
CIITA-204ENST00000570546 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.22■□□□□ 0.19
CIITA-204ENST00000570546 PFDN1O60925 122 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 SPATA33Q96N06 139 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 OSBPL1AQ9BXW6 950 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 OSBPL8Q9BZF1 889 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 UNC45AQ9H3U1 944 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 RAB21Q9UL25 225 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 PCDHB2Q9Y5E7 798 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 GNGT2O14610 69 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 RNF149Q8NC42 400 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 C18orf8Q96DM3 657 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 VPS39Q96JC1 886 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 UPF3AQ9H1J1 476 aaKnown RBP16.21■□□□□ 0.19
CIITA-204ENST00000570546 TMBIM4Q9HC24 238 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 EIF4E1BA6NMX2 242 aaKnown RBP16.21■□□□□ 0.19
CIITA-204ENST00000570546 IL1RL1Q01638 556 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 OCRLQ01968 901 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 BAATQ14032 418 aaPredicted RBP16.21■□□□□ 0.19
CIITA-204ENST00000570546 GIT2Q14161 759 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 MEI1Q5TIA1 1274 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 EXT2Q93063 718 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 SLC40A1Q9NP59 571 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 NPHS2Q9NP85 383 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 ANLNQ9NQW6 1124 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 NDE1Q9NXR1 346 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 ADORA2BP29275 332 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 MAGEA4P43358 317 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 PIGHQ14442 188 aaPredicted RBP16.21■□□□□ 0.19
CIITA-204ENST00000570546 MYLK4Q86YV6 388 aaPredicted RBP16.21■□□□□ 0.19
CIITA-204ENST00000570546 LRRC43Q8N309 656 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 ACTRT1Q8TDG2 376 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 FOXP3Q9BZS1 431 aa16.21■□□□□ 0.19
CIITA-204ENST00000570546 ARHGEF37A1IGU5 675 aa16.21■□□□□ 0.18
CIITA-204ENST00000570546 HNRNPCL1O60812 293 aaKnown RBP16.21■□□□□ 0.18
CIITA-204ENST00000570546 HLA-DRAP01903 254 aa16.21■□□□□ 0.18
CIITA-204ENST00000570546 ZFXP17010 805 aaPredicted RBP16.21■□□□□ 0.18
CIITA-204ENST00000570546 LONP2Q86WA8 852 aa16.21■□□□□ 0.18
CIITA-204ENST00000570546 LPAR1Q92633 364 aa16.21■□□□□ 0.18
CIITA-204ENST00000570546 WWP1Q9H0M0 922 aa16.21■□□□□ 0.18
CIITA-204ENST00000570546 GSTA4O15217 222 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 KCNN4O15554 427 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 MAPK7Q13164 816 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 TTLL4Q14679 1199 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 RSBN1LQ6PCB5 846 aaPredicted RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 SLC13A5Q86YT5 568 aaPredicted RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 KIAA0895Q8NCT3 520 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 GJD4Q96KN9 370 aaPredicted RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 TTC1Q99614 292 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 DMGDHQ9UI17 866 aaKnown RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 STAT5BP51692 787 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 SYCP2LQ5T4T6 812 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 MOXD1Q6UVY6 613 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 COL23A1Q86Y22 540 aaPredicted RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 AGGF1Q8N302 714 aaeCLIP16.2■□□□□ 0.18
CIITA-204ENST00000570546 TRIM15Q9C019 465 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 XPO7Q9UIA9 1087 aaKnown RBP16.2■□□□□ 0.18
CIITA-204ENST00000570546 TTC36A6NLP5 189 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 NPEPPSP55786 919 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 EMC2Q15006 297 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 KIF19Q2TAC6 998 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 CAVIN3Q969G5 261 aa16.2■□□□□ 0.18
CIITA-204ENST00000570546 TSSK1BQ9BXA7 367 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms