RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 THP07101 528 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 CTSBP07858 339 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 KCNA2P16389 499 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PTPRAP18433 802 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PLCG1P19174 1290 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 BTF3P20290 206 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 NTF4P34130 210 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 EPHX2P34913 555 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 SERPINF1P36955 418 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 BUD31P41223 144 aaPredicted RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 ITGA8P53708 1063 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 DRG2P55039 364 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 PSMC1P62191 440 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 FOXO4P98177 505 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 ATP11AP98196 1134 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PCDH1Q08174 1060 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 C17orf67Q0P5P2 114 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 DCTN1Q14203 1278 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 E2F5Q15329 346 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 TESK1Q15569 626 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PFKFB4Q16877 469 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 SLC35G1Q2M3R5 365 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 ANO6Q4KMQ2 910 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 TMEM177Q53S58 311 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 CCDC158Q5M9N0 1113 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 FBXO47Q5MNV8 452 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 WIPI1Q5MNZ9 446 aaPredicted RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 ARMC4Q5T2S8 1044 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 TANGO2Q6ICL3 276 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 DSTYKQ6XUX3 929 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 TEX11Q8IYF3 940 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 SAMD14Q8IZD0 417 aaPredicted RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 EFHBQ8N7U6 833 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 C7orf31Q8N865 590 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 CCDC191Q8NCU4 936 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 LRTOMTQ8WZ04 291 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 ANKS1AQ92625 1134 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 RBM18Q96H35 190 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 MAELQ96JY0 434 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 ZC3H10Q96K80 434 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 IPO9Q96P70 1041 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 SLC2A13Q96QE2 648 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 NTPCRQ9BSD7 190 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 TXLNGYQ9BZA5 131 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 ARHGAP39Q9C0H5 1083 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 RASSF4Q9H2L5 321 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 CLEC4MQ9H2X3 399 aaPredicted RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 NKX2-4Q9H2Z4 354 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 NOL6Q9H6R4 1146 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 ZMAT4Q9H898 229 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 BRD9Q9H8M2 597 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 STARD7Q9NQZ5 370 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 GJB4Q9NTQ9 266 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PIH1D1Q9NWS0 290 aaKnown RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 WDR35Q9P2L0 1181 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 TMEFF2Q9UIK5 374 aaPredicted RBP3.4□□□□□ -1.87
VPS35-209ENST00000568642 BLOC1S6Q9UL45 172 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 DENND2AQ9ULE3 1009 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PPP1R9AQ9ULJ8 1098 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 LIMCH1Q9UPQ0 1083 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 INVSQ9Y283 1065 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PCDHGC5Q9Y5F6 944 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 PCDHGB5Q9Y5G0 923 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 NR2E3Q9Y5X4 410 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 KIF1BO60333 1816 aa3.4□□□□□ -1.87
VPS35-209ENST00000568642 E9PCH4 1651 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 MON2Q7Z3U7 1717 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ZFHX2Q9C0A1 2572 aaPredicted RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 A0A1W2PPC4 97 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 PTPDC1A2A3K4 754 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 FAM234BA2RU67 622 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 LGALS16A8MUM7 142 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 H0Y3Z8 333 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 TM4SF5O14894 197 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ZNF862O60290 1169 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 NDUFS2O75306 463 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 KRT38O76015 456 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ALX3O95076 343 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 GOSR1O95249 250 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 HSPA4LO95757 839 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 PARP1P09874 1014 aaKnown RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 ESRRAP11474 423 aaPredicted RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 HARSP12081 509 aaKnown RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 ENPP1P22413 925 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 HTR1BP28222 390 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 MC4RP32245 332 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CTNNA1P35221 906 aaKnown RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 ACTN2P35609 894 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ALDH9A1P49189 494 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 PAPOLAP51003 745 aaKnown RBP3.39□□□□□ -1.87
VPS35-209ENST00000568642 CLCN2P51788 898 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 PNLIPRP1P54315 467 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 DSC2Q02487 901 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CDC16Q13042 620 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ADAM9Q13443 819 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ERV3-1Q14264 604 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 SPARCL1Q14515 664 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 PTPN14Q15678 1187 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 CLEC16AQ2KHT3 1053 aa3.39□□□□□ -1.87
VPS35-209ENST00000568642 ZACNQ401N2 412 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms