RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PDZD7Q9H5P4 517 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 KMT5AQ9NQR1 393 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 MIOSQ9NXC5 875 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 CCDC39Q9UFE4 941 aa15.25■□□□□ 0.03
CLN3-235ENST00000568497 A0A0U1RQF3 1178 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 POLR2DO15514 142 aaKnown RBP15.24■□□□□ 0.03
CLN3-235ENST00000568497 FAM13AO94988 1023 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 POMCP01189 267 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 SRFP11831 508 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 AFMP43652 599 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 OSTNP61366 133 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 KRT85P78386 507 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 DMWDQ09019 674 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 DMP1Q13316 513 aaPredicted RBP15.24■□□□□ 0.03
CLN3-235ENST00000568497 PRPF4BQ13523 1007 aaKnown RBP15.24■□□□□ 0.03
CLN3-235ENST00000568497 E2F4Q16254 413 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 ZC2HC1CQ53FD0 456 aaPredicted RBP15.24■□□□□ 0.03
CLN3-235ENST00000568497 SFR1Q86XK3 245 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 IFNLR1Q8IU57 520 aaPredicted RBP15.24■□□□□ 0.03
CLN3-235ENST00000568497 ATRIPQ8WXE1 791 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 KIFAP3Q92845 792 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 ZFP42Q96MM3 310 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 FOXQ1Q9C009 403 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 SERTAD1Q9UHV2 236 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 IPPQ9Y573 584 aa15.24■□□□□ 0.03
CLN3-235ENST00000568497 F8W810 466 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 ZC3H11AO75152 810 aaKnown RBP eCLIP15.23■□□□□ 0.03
CLN3-235ENST00000568497 OFD1O75665 1012 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 PLS3P13797 630 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 TXLNAP40222 546 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 BCAR1P56945 870 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 CDC42EP1Q00587 391 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 PTPN14Q15678 1187 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 PPM1JQ5JR12 505 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 RESP18Q5W5W9 173 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 PHLDB3Q6NSJ2 640 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 PPFIBP1Q86W92 1011 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 ZNF280BQ86YH2 543 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 DDX12PQ92771 950 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 DNAJC19Q96DA6 116 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 GAD1Q99259 594 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 HAPLN2Q9GZV7 340 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 SPATA6Q9NWH7 488 aaPredicted RBP15.23■□□□□ 0.03
CLN3-235ENST00000568497 SNTG2Q9NY99 539 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 DLGAP2Q9P1A6 1054 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 CFAP45Q9UL16 551 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 SMG5Q9UPR3 1016 aaKnown RBP15.23■□□□□ 0.03
CLN3-235ENST00000568497 GDAQ9Y2T3 454 aa15.23■□□□□ 0.03
CLN3-235ENST00000568497 K7ENM7 598 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 K7ERI5 159 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 LAMTOR5O43504 91 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 N4BP1O75113 896 aaKnown RBP15.22■□□□□ 0.03
CLN3-235ENST00000568497 PRR29P0C7W0 189 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 CTSAP10619 480 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 IDEP14735 1019 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 PFKFB1P16118 471 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 IGFBP6P24592 240 aaPredicted RBP15.22■□□□□ 0.03
CLN3-235ENST00000568497 ANP32AP39687 249 aaKnown RBP15.22■□□□□ 0.03
CLN3-235ENST00000568497 MLH1P40692 756 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 CASP5P51878 434 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 KCNA1Q09470 495 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 MAPK6Q16659 721 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 NOTUMQ6P988 496 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 DCLRE1AQ6PJP8 1040 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 CCDC73Q6ZRK6 1079 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 SV2BQ7L1I2 683 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 TMEM173Q86WV6 379 aaPredicted RBP15.22■□□□□ 0.03
CLN3-235ENST00000568497 SLC44A3Q8N4M1 653 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 TMEM161BQ8NDZ6 487 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 PJA1Q8NG27 643 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 DRC1Q96MC2 740 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 FIZ1Q96SL8 496 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 MRPL9Q9BYD2 267 aaKnown RBP15.22■□□□□ 0.03
CLN3-235ENST00000568497 CHST12Q9NRB3 414 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 PRMT7Q9NVM4 692 aaPredicted RBP15.22■□□□□ 0.03
CLN3-235ENST00000568497 DACT1Q9NYF0 836 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 ARHGAP28Q9P2N2 729 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 DNAJB4Q9UDY4 337 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 PARP2Q9UGN5 583 aa15.22■□□□□ 0.03
CLN3-235ENST00000568497 MIA3Q5JRA6 1907 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 CNTNAP2Q9UHC6 1331 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 CARNS1A5YM72 827 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 TULP1O00294 542 aaPredicted RBP15.21■□□□□ 0.03
CLN3-235ENST00000568497 ACKR2O00590 384 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 LRRN2O75325 713 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 TBCAO75347 108 aaKnown RBP15.21■□□□□ 0.03
CLN3-235ENST00000568497 DDHD2O94830 711 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 MYBP10242 640 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 MAPTP10636 758 aaKnown RBP15.21■□□□□ 0.03
CLN3-235ENST00000568497 ITGA4P13612 1032 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 GLULP15104 373 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 KLRC2P26717 231 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 SCNN1GP51170 649 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 NDUFA8P51970 172 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 CSTF1Q05048 431 aaKnown RBP15.21■□□□□ 0.03
CLN3-235ENST00000568497 PPP2R5AQ15172 486 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 ZBTB41Q5SVQ8 909 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 ATF7IP2Q5U623 682 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 C15orf39Q6ZRI6 1047 aa15.21■□□□□ 0.03
CLN3-235ENST00000568497 FSIP1Q8NA03 581 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms