RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 IER5LQ5T953 404 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 MAP4K3Q8IVH8 894 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 CASP10Q92851 521 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 DHX58Q96C10 678 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 MFSD14AQ96MC6 490 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 EMILIN2Q9BXX0 1053 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 RXFP1Q9HBX9 757 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 KBTBD4Q9NVX7 518 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 CNTN3Q9P232 1028 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 MUTYHQ9UIF7 546 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 USP15Q9Y4E8 981 aaPredicted RBP16.42■□□□□ 0.22
VPS39-210ENST00000568357 A0A0B4J269 797 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 TEX28O15482 410 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 FAM189A1O60320 539 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 PPP1R37O75864 691 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 SRGAP2BP0DMP2 458 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 IDEP14735 1019 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 GAP43P17677 238 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 KLRC2P26717 231 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 TNFSF9P41273 254 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 KCNA1Q09470 495 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 UPP1Q16831 310 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 USP41Q3LFD5 358 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 HERC4Q5GLZ8 1057 aaPredicted RBP16.41■□□□□ 0.22
VPS39-210ENST00000568357 RTP2Q5QGT7 225 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 RESP18Q5W5W9 173 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 KIAA1841Q6NSI8 718 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 KANK3Q6NY19 840 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 DCLRE1AQ6PJP8 1040 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 ADHFE1Q8IWW8 467 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 C12orf76Q8N812 135 aaPredicted RBP16.41■□□□□ 0.22
VPS39-210ENST00000568357 IQUBQ8NA54 791 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 SUSD6Q92537 303 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 C18orf25Q96B23 403 aaPredicted RBP16.41■□□□□ 0.22
VPS39-210ENST00000568357 FGFBP2Q9BYJ0 223 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 MRPL44Q9H9J2 332 aaKnown RBP16.41■□□□□ 0.22
VPS39-210ENST00000568357 PANK4Q9NVE7 773 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 SEL1LQ9UBV2 794 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 SSX2IPQ9Y2D8 614 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 C5orf42Q9H799 3197 aa16.41■□□□□ 0.22
VPS39-210ENST00000568357 CFAP54Q96N23 3096 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 POLR2DO15514 142 aaKnown RBP16.4■□□□□ 0.22
VPS39-210ENST00000568357 B3GAT3O94766 335 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 CLTAP09496 248 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 CXCL8P10145 99 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 HOXB8P17481 243 aaPredicted RBP16.4■□□□□ 0.22
VPS39-210ENST00000568357 ABCD1P33897 745 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 CLCN4P51793 760 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 CASP5P51878 434 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 SPAG1Q07617 926 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 BECN1Q14457 450 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 FAM171A1Q5VUB5 890 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 PPFIBP1Q86W92 1011 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 TMEM130Q8N3G9 435 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 C3orf58Q8NDZ4 430 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 FEZF2Q8TBJ5 459 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 LEO1Q8WVC0 666 aaPredicted RBP16.4■□□□□ 0.22
VPS39-210ENST00000568357 RIN2Q8WYP3 895 aaPredicted RBP16.4■□□□□ 0.22
VPS39-210ENST00000568357 TNMDQ9H2S6 317 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 CUEDC2Q9H467 287 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 PRKAG3Q9UGI9 489 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 CDH22Q9UJ99 828 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 STYXL1Q9Y6J8 313 aa16.4■□□□□ 0.22
VPS39-210ENST00000568357 SF3B1O75533 1304 aaKnown RBP eCLIP16.4■□□□□ 0.22
VPS39-210ENST00000568357 TRIOO75962 3097 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 TTC26A0AVF1 554 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 LACTBL1A8MY62 500 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 OGTO15294 1046 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 MYBP10242 640 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 RPL17P18621 184 aaKnown RBP16.39■□□□□ 0.21
VPS39-210ENST00000568357 PTPN5P54829 565 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 TCF15Q12870 199 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 ENOX2Q16206 610 aaKnown RBP16.39■□□□□ 0.21
VPS39-210ENST00000568357 PRSS55Q6UWB4 352 aaPredicted RBP16.39■□□□□ 0.21
VPS39-210ENST00000568357 GPR65Q8IYL9 337 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 HPS3Q969F9 1004 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 UROC1Q96N76 676 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 MSTO1Q9BUK6 570 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 TRIM9Q9C026 710 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 ADAM7Q9H2U9 754 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 PLEKHA5Q9HAU0 1116 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 OLFML3Q9NRN5 406 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 SLC38A7Q9NVC3 462 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 FAM86C1Q9NVL1 165 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 FAM13BQ9NYF5 915 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 PLXNA3P51805 1871 aa16.39■□□□□ 0.21
VPS39-210ENST00000568357 TMEM189-UBE2V1I3L0A0 370 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 I3L4J1 428 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 GCNT3O95395 438 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 ADRB2P07550 413 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 WEE2P0C1S8 567 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 ADSSP30520 456 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 KRT85P78386 507 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 ZBTB6Q15916 424 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 TPRNQ4KMQ1 711 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 CEP57Q86XR8 500 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 LNX1Q8TBB1 728 aaPredicted RBP16.38■□□□□ 0.21
VPS39-210ENST00000568357 HVCN1Q96D96 273 aa16.38■□□□□ 0.21
VPS39-210ENST00000568357 DDX27Q96GQ7 796 aaKnown RBP16.38■□□□□ 0.21
VPS39-210ENST00000568357 SPATA32Q96LK8 384 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms