RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DNM3Q9UQ16 869 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 MAP3K2Q9Y2U5 619 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 A0A1B0GTW7 788 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 KIAA0355O15063 1070 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 GPR39O43194 453 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 ORC4O43929 436 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 GPR32O75388 356 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 SPDEFO95238 335 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 CKBP12277 381 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 ZFP36P26651 326 aaKnown RBP3.94□□□□□ -1.78
VPS35-207ENST00000568191 SEC24CP53992 1094 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 MRPS21P82921 87 aaKnown RBP3.94□□□□□ -1.78
VPS35-207ENST00000568191 MGAT2Q10469 447 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 TP53BP2Q13625 1128 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 CLUL1Q15846 466 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 ZNF529Q6P280 563 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 GIMAP6Q6P9H5 292 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 Q6ZVL8 140 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 ADGRG3Q86Y34 549 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 FITM2Q8N6M3 262 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 STON2Q8WXE9 905 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 LINC00476Q8WZB0 136 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 MED15Q96RN5 788 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 HEPHQ9BQS7 1158 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 CASS4Q9NQ75 786 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 KLHL11Q9NVR0 708 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 LRIT1Q9P2V4 623 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 DKK2Q9UBU2 259 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 AJAP1Q9UKB5 411 aaPredicted RBP3.94□□□□□ -1.78
VPS35-207ENST00000568191 PCDHGA2Q9Y5H1 932 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 GPR45Q9Y5Y3 372 aa3.94□□□□□ -1.78
VPS35-207ENST00000568191 IGSF3O75054 1194 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 RPLP2P05387 115 aaKnown RBP3.93□□□□□ -1.78
VPS35-207ENST00000568191 EGR2P11161 476 aaPredicted RBP3.93□□□□□ -1.78
VPS35-207ENST00000568191 GPR3P46089 330 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 PTTG1IPP53801 180 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 SLC16A1P53985 500 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 COL10A1Q03692 680 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 SYCE2Q6PIF2 218 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 MIGA2Q7L4E1 593 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 RSPH3Q86UC2 560 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 FBXO18Q8NFZ0 1043 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS35-207ENST00000568191 CCHCR1Q8TD31 782 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 PNKPQ96T60 521 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 DUSP26Q9BV47 211 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 TEX101Q9BY14 249 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 CCM2LQ9NUG4 571 aaPredicted RBP3.93□□□□□ -1.78
VPS35-207ENST00000568191 TMEM74BQ9NUR3 256 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 SYBUQ9NX95 663 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 SCOCQ9UIL1 159 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 KCNE5Q9UJ90 142 aa3.93□□□□□ -1.78
VPS35-207ENST00000568191 EPN1Q9Y6I3 576 aaPredicted RBP3.93□□□□□ -1.78
VPS35-207ENST00000568191 ATRNL1Q5VV63 1379 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 PRKD3O94806 890 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 EYA4O95677 639 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 VIL1P09327 827 aaKnown RBP3.92□□□□□ -1.78
VPS35-207ENST00000568191 DDCP20711 480 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 GCSHP23434 173 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 GUCY1A2P33402 732 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 ALDH1A3P47895 512 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 CXADRP78310 365 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 KLF1Q13351 362 aaPredicted RBP3.92□□□□□ -1.78
VPS35-207ENST00000568191 CSRP2Q16527 193 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 METRNLQ641Q3 311 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 SEM1Q6ZVN7 128 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 RD3Q7Z3Z2 195 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 CMIPQ8IY22 773 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 SLC44A3Q8N4M1 653 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 AOPEPQ8N6M6 819 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 NUP133Q8WUM0 1156 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 PTCD3Q96EY7 689 aaKnown RBP3.92□□□□□ -1.78
VPS35-207ENST00000568191 ADAM2Q99965 735 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 PUS7LQ9H0K6 701 aaKnown RBP3.92□□□□□ -1.78
VPS35-207ENST00000568191 LDAHQ9H6V9 325 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 RSAD1Q9HA92 442 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 KIAA1586Q9HCI6 787 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 DMRT3Q9NQL9 472 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 TLK1Q9UKI8 766 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 MRFAP1Q9Y605 127 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 MAST3O60307 1309 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 PNPLA7Q6ZV29 1317 aa3.92□□□□□ -1.78
VPS35-207ENST00000568191 MYADML2A6NDP7 307 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 MARCH11A6NNE9 402 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 MASP2O00187 686 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 KIAA0391O15091 583 aaKnown RBP3.91□□□□□ -1.78
VPS35-207ENST00000568191 OSMP13725 252 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 FGFR4P22455 802 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 MTNR1BP49286 362 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 HSD11B2P80365 405 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 MRPS35P82673 323 aaKnown RBP3.91□□□□□ -1.78
VPS35-207ENST00000568191 PPP3CAQ08209 521 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 CCDC142Q17RM4 750 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 PRR16Q569H4 304 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 RNF187Q5TA31 235 aaPredicted RBP3.91□□□□□ -1.78
VPS35-207ENST00000568191 PPP4R3AQ6IN85 833 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 PGM2L1Q6PCE3 622 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 Q6ZNX1 250 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 UBE3BQ7Z3V4 1068 aa3.91□□□□□ -1.78
VPS35-207ENST00000568191 PRIMA1Q86XR5 153 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms